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"fi": "Visuaalisen maisemaseurannan kuvia viljelymaisemista sekä perinnebiotoopeista vuosilta 1996-2020. Aineisto koostuu digitaalisista kuvatiedostoista. Valokuvien alkuperäiset negatiivit ovat Suomen valokuvataiteen museon kokoelmissa.\n\nVisuaalinen maisemaseuranta kertoo valokuvin maaseudun kulttuurimaisemien muuttumisesta Suomessa 2000-luvun aikana. Muutoksia voi seurata vertaamalla toisiinsa eri ajankohtina otettuja valokuvia samoista kohteista. Seuranta perustuu noin 5–10 vuoden välein otettuihin valokuviin, jotka havainnollistavat maisemassa tapahtuneita muutoksia. Seurannan aikana maaseutumaisemaa on taltioitu tuhansiin valokuviin.\nKuva-aineisto jakautuu kahteen osaan. Laajemman kokonaisuuden muodostavat vuodesta 1996 alkaen kuvatut peltomaisemat. Pääosa niistä sijaitsee valtakunnallisesti arvokkailla maisema-alueilla ja osa maatalouden ympäristötuen vaikuttavuuden seurannan tutkimusalueilla. Toinen aineisto koostuu 1990-luvun inventoinneissa luontoarvoiltaan merkittäviksi arvioiduista perinnebiotoopeista. Aineisto sisältää yhteensä yli 5 000 panoraamavalokuvaa sekä videoita ja 360° kuvia.\n\n### Kuvaukset peltomaisemissa\nViljelymaisemien visuaalisessa seurannassa kuvauksia on tehty yhteensä 13 alueella, joista kymmenen on valtakunnallisesti arvokkaita maisema-alueita. Lisäksi kuvauksia tehtiin Kolarissa vuonna 2010.\n\nKullakin alueella kuvauksia on tehty 7–13 karttatarkastelujen perusteella valitussa maastopisteessä. Samoista koordinaateista ja kuvakulmista otetut kuvat mahdollistavat maisemamuutosten seuraamisen. Jokaisesta maastopisteestä on otettu kuvat kohti kaikkia pääilmansuuntia.\n\nKuvaukset on toistettu samoissa kohteissa viiteen kertaan: vuosina 1996, 2000, 2005, 2010 ja 2020. Muutamilla alueilla täydentäviä kuvauksia on tehty myös vuosina 2001–2003. Vuoden 1996 kuva-aineistot ovat pääosin mustavalkoisia ja ne on otettu eri kuvakoossa kuin myöhemmät kuvat. Myöhempinä vuosina kerätyt kuva-aineistot ovat yhdenmukaisia keskenään. \n\nAlkuperäisiä kuvausmenetelmiä täydennettiin vuonna 2020 dronekuvauksilla. Dronen avulla viljelymaisemista tallennettiin pallopanoraamoja, 360 asteen videoita ja ylilentokuvia.\n\nSeurannan aikana maaseudun viljelymaisemista on kertynyt lähes 3 000 valokuvaa.\n\n### Kuvaukset perinnebiotoopeilla\nPerinnebiotooppien eli perinnemaisemien seurannassa kuvauksia on tehty 48 alueella, joista puolet sijaitsee Uudellamaalla ja puolet Pirkanmaalla. Kaikki kuvauskohteet on arvioitu luontoarvoiltaan merkittäviksi 1990-luvulla tehdyssä valtakunnallisessa perinnebiotooppien inventoinnissa. Ne sisältyvät myös Suomen ympäristökeskuksen tutkimukseen, jossa selvitettiin hoitotoimien vaikutusta perinnebiotooppien eliölajistoon.\n\nJokaisessa perinnebiotooppikohteessa kuvauksia on tehty neljässä maastopisteessä. Nämä pisteet on sijoitettu Suomen ympäristökeskuksen käyttämän 50x50 metrin koealan neljään kulmapisteeseen. Kustakin kulmapisteestä on otettu aina kaksi kuvaa, yksi kohti myötäpäivään seuraavaa kulmaa ja toinen kohti vastakkaista kulmapistettä. Yhdellä kuvauskerralla kustakin kohteesta on siten otettu kahdeksan kuvaa.\n\nKuvaukset on toistettu samoilla kohteilla pääsääntöisesti neljään kertaan: vuonna 2001, vuosina 2006–2007, vuosina 2011–2012 ja vuosina 2017–2019. Muutamilla alueilla kuvauksia on tehty myös välivuosina.\n\nSeurannan aikana perinnebiotoopeista on kertynyt lähes 2 500 valokuvaa.\n\n### Kuvaajat\nTaT Tapio Heikkilä käynnisti visuaalisen maisemaseurannan kuva-aineistojen keräämisen vuonna 1996. Hänen vuonna 2007 valmistunut väitöskirjatyönsä perustui näihin aineistoihin. Heikkilä teki pitkän uran maisemansuojeluun liittyvissä tehtävissä ympäristöministeriössä.\n\nTaM Martina Motzbäuchel on osallistunut vuodesta 2005 alkaen keskeisesti visuaalisen maisemaseurannan maastokuvauksiin ja kuva-aineistojen arkistoimiseen. Hän työskentelee free lance -valokuvaajana.\n\nOiva Hakala toimi Visuaalisen maisemaseurannan valokuvaajana vuodesta 1996 lähtien.\n\nTaM Antti Hahl toimi Visuaalisen maisemaseurannan valokuvaajana vuonna 2019.\n\nFT Reija Hietala osallistui hankkeen valmisteluun ja suunnitteluun työn eri vaiheissa."
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"en": "The survey studied Finnish public opinion on science and research and mapped their role in society. As a new theme, respondents were asked about their attitudes toward artificial intelligence and its applications in society. First, respondents were asked which scientific fields interested them and where they obtained information about science and its development. Respondents were also asked about the future impact of science and research on people's everyday lives, and to evaluate various aspects of the state and quality of science and research in Finland. Next, respondents were asked about their trust in various institutions, including the European Parliament, the church, trade unions, the media, the armed forces, and universities. The respondents were also asked to name a Finnish researcher whom they considered trustworthy. In addition, questions were asked about the development of science and research and the ability of science to solve societal problems. Respondents were also asked about the relation between science and politics. The survey also included various attitudinal statements about science and research. The statements covered, for instance, relationships between religion and science, science funding, alternative medicine, researchers' involvement in politics, use of scientific information in political decision-making, impact of scientific and technological development, climate change, and nutrition. Finally, the respondents' attitudes toward artificial intelligence and its applications, such as self-driving cars or facial recognition in border control, were examined. The respondents were also asked to consider the opportunities and threats posed by artificial intelligence in an open-ended question. Background variables included the respondent's gender, age, population of their municipality of residence, NUTS2 region, type of accommodation, household characteristics, basic and vocational education, statistical grouping of municipalities, political party preference, economic activity and occupational status, and household's annual income."
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"en": "The data may contain identifiers that have not been anonymised (e.g. person names, information on place of residence, names of work places and such). When publishing quotations from the data, users need to consider very carefully in each specific case what information needs to be removed or altered according to research ethical guidelines."
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],
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"description": {
"fi": "Aineisto koostuu kirjoituksista, jotka käsittelevät äitiyspakkauksiin liittyviä muistoja tai kokemuksia eri vuosikymmeniltä. Kirjoituksissa korostuu pohdinta äitiyspakkauksen valinnasta, tuotteista ja merkityksestä. Muistitietokeruun on järjestänyt Suomalaisen Kirjallisuuden Seura yhdessä Tanja Vahtikarin (Tampereen yliopisto) johtaman Äitiyspakkaus tunne-esineenä: hyvinvointivaltion sosiomateriaaliaalinen kokemus 1930-luvulta 2000-luvulle -tutkimushankeen kanssa. Kirjoituskutsulla etsittiin henkilöitä, joilla on jokin äitiyspakkaukseen liittyvä muisto tai kokemus kerrottavanaan. Kutsussa vastaajille annettiin useita apukysymyksiä kirjoittamisen helpottamiseksi ja ohjaamiseksi. Niissä pyydettiin pohtimaan mm. äitiyspakkaukseen liittyviä puhetapoja, näkemyksiä ja tarinoita lähipiirissä tai laajemmassa kontekstissa, pakkauksen saamiseen liittyviä tuntemuksia sekä sen merkittävimpiä esineitä. Lisäksi vastaajille tarjottiin mahdollisuutta pohtia sitä, millainen äitiyspakkauksen merkitys on ollut Suomen lähihistoriassa ja mieltääkö pakkauksen suomalaisen hyvinvointivaltion symboliksi. Kirjoituksissa esiintyviä teemoja ovat esimerkiksi äitiyspakkaukseen liittyvät puhetavat, pakkauksen tunnearvo ja käytännön apu, vanhemmaksi tulemisen konkretisoituminen sekä äitiyspakkauksen asema suomalaisessa hyvinvointiyhteiskunnassa. Taustatietoina kysyttiin vastaajan sukupuolta, syntymäaikaa, ammattia ja paikkakuntia. Aineistosta on tehty jatkokäyttäjälle html-versio, jonka hakemiston avulla kirjoituksia on helppo selata.",
"en": "The dataset consists of self-administered written texts on memories or experiences related to maternity packages across several decades. The main themes of the texts include the choice to receive the maternity package, the products included in the package and the meaning of the maternity package. The data collection was organised by the Finnish Literature Society in cooperation with the research project Baby Box as an Emotional Object: the Sociomaterial Experiences of the Finnish Welfare State from the 1930s to the Present, led by Tanja Vahtikari (University of Tampere). The writing invitation was targeted at individuals with memories or experiences related to maternity packages. The writing guidelines included directed participants to write about, for example, the way maternity packages are talked about, views and stories related to maternity packages in their immediate circle and the wider public, the feelings associated with receiving the maternity package, and the most memorable products included in the package. Participants were also given the opportunity to reflect on the importance of the maternity package in Finland's recent history and whether they perceive it as a symbol of the Finnish welfare state. The themes that emerged from the texts included the ways maternity packages are talked about, the sentimental and practical value of the package, the way that the maternity package had made becoming a parent tangible, and the role of the maternity package in the Finnish welfare society. Background information included the participant's gender, year of birth, occupation and area of residence. The data were organised into an easy to use HTML version at FSD. The dataset is only available in Finnish."
},
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{
"id": "eb6d49d6-6bfc-4d8c-86b8-d9497924b295",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta5",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Social sciences",
"fi": "YHTEISKUNTATIETEET",
"sv": "Samhällsvetenskaper"
}
}
],
"infrastructure": [],
"issued": "2024-03-04",
"keyword": [
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"vanhemmuus",
"äitiyshuolto",
"hyvinvointivaltio",
"tunteet",
"tunnearvo",
"kokemukset",
"muistelmat",
"muistot",
"merkitys (tärkeys)",
"social welfare philosophy",
"parental role",
"parental benefits",
"pregnancy",
"emotional states",
"maternity care",
"Terveyspalvelut ja terveyspolitiikka",
"Perhesuunnittelu ja lisääntymisterveys",
"Sosiaalipalveluiden käyttö ja saatavuus",
"Kansanterveys",
"Health care services and policies",
"Reproductive health",
"Specific social services: use and availability",
"Public health"
],
"language": [
{
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"url": "http://lexvo.org/id/iso639-3/fin",
"in_scheme": "http://lexvo.org/id/",
"pref_label": {
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"fi": "suomi",
"sv": "finska"
}
}
],
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"organization": "fairdata.fi"
},
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{
"notation": "https://doi.org/10.60686/t-fsd3608",
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},
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],
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{
"id": "8418d8bc-7f69-4edd-a2d5-f9bceedde0ee",
"title": {
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},
"description": {
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},
"spatial": {
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},
"temporal": {
"start_date": "2020-09-01",
"end_date": "2021-01-31"
},
"is_associated_with": [],
"used_entity": [],
"variables": [
{
"id": "48e4d91a-6ba2-47a8-8db9-8c1a92a4be24",
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"en": "The dataset consists of interviews with coaches and coachees on their thoughts and experiences regarding intermediate labour market workshop activities and their development. The data also include coaching session recordings from one workshop. The data were collected as part of the 'Building Innovation Agency through Empowering Backstage Collaboration' (BINEC) research project, funded by the Emil Aaltonen Foundation. The interviews with the coaches examined their views on the process of developing services for the unemployed and their experiences of working with the clients. The aim was to understand the process and current state of the development of intermediate labour market services. In the interviews with the clients, questions surveyed their experiences and views regarding the activities of intermediate labour market workshops as well as their future plans. The coaching process as a whole was surveyed through the recordings of one-on-one coaching sessions. Themes of discussion in the interviews and sessions included, among others, long-term unemployment, promotion of employment, rehabilitation, Green Care, promotion of activity, and social interaction. Background information included the date of the interview or session, type of data collected (interview or recording), participants, and the participants' role in the workshop. The data were organised into an easy to use HTML version at FSD. The dataset is available only in Finnish."
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"en": "This resource will be made available via the Language Bank of Finland.\n\nThe resource was collected in the research project “Finnish Language Attrition in the USA”. The resource consists of elicited and free speech samples (in Finnish and in English), background information, the answers to a sociolinguistic questionnaire and a linguistic wug test (in Finnish) collected from 38 Finnish-American adult immigrants. The interviews were conducted between October 2017 and November 2018. \n\nThe research participants had immigrated to the US from Finland as adults or older children and they had resided in the US for a minimum of 20 years. To allow for group comparisons, data from a monolingual group (N = 50) of Finnish speakers residing in Finland is also included. The groups were matched for age, education, and gender.\n\nFurther details of each type of data included in the resource are provided below.\n\nThe sociolinguistic questionnaire:\nBackground information for the language attrition group was collected using the sociolinguistic questionnaire (SQ) included in the Language Attrition Test Battery (Schmid, 2011). The SQ comprises of 71 questions, covering numerous self-reports on different aspects of language history, use, attitudes, and affiliations. The complete SQ is available at www.languageattrition.org, including instructions for use and analysis. The author translated the SQ into Finnish, and language attriters had the choice to complete it in either Finnish or English (Finnish N = 28, English, N = 10). For the monolingual control group, an abridged version of the questionnaire was used to confirm the use of Finnish in everyday contexts. Examples of all questionnaires are available alongside the data derived from the questionnaires. The data are available in spreadsheet format.\n\nThe speech recordings (Finnish and English):\nFor a free speech sample, a silent movie clip (a 9-minute 57-second segment from Charlie Chaplin's Modern Times, 1936) was used to elicit narration (following Purdue, 1993). This task was recorded in Finnish and English for the Finnish-American group (Finnish, N = 38, English N = 37) and in Finnish (N = 50) for the Finnish monolingual group (N = 50). \nIn addition, the participants in the Finnish American group were invited to share a brief story about their immigration journey in Finnish. Audio files of these speech samples are included from those participants who chose to share their story (N = 38). The speech samples are available as audio files.\n\nWUG Test (Finnish):\nA WUG test was administered to assess the participants' ability to inflect words in context. WUG tests are designed to gauge the knowledge of morphological rules by asking participants to complete sentences using non-words following productive morphological rules (Berko, 1958). An existing Finnish morphology WUG test (Lyytinen, 2003) was used as the starting point, and additional tasks were generated to cover all grammatical cases in Finnish (total of 15 cases). The test included 90 sentences in total and the sentences were presented in a pseudo-randomized order. The data are available as audio files and the corresponding tasks are provided as text files.\nThe data for the WUG test are available in Finnish for both the Finnish-American participant group (N = 38) and the Finnish monolingual group (N = 50).",
"fi": "Tämä aineisto on tulossa saataville Kielipankin kautta.\n\nAineisto on kerätty amerikansuomea koskevassa tutkimushankkeessa “Finnish Language Attrition in the USA”. Aineisto koostuu 38 aikuiselta amerikansuomalaiselta maahanmuuttajalta kerätystä elisitoidusta ja vapaasta suomen- ja englanninkielisestä puheesta, taustatiedoista, sosiolingvistisen kyselyn vastauksista sekä suomenkielisen wug-testin vastauksista. Haastattelut tehtiin lokakuun 2017 ja marraskuun 2018 välisenä aikana.\n\nTutkimuksen osallistujat olivat muuttaneet Suomesta Yhdysvaltoihin aikuisina tai myöhäislapsuudessa ja he olivat asuneet Yhdysvalloissa vähintään 20 vuotta. Ryhmien vertailua varten aineistossa on mukana vastaavaa materiaalia myös Suomessa asuvilta yksikielisiltä puhujilta (N=50). Ryhmät vastasivat toisiaan puhujien iän, koulutustason ja sukupuolijakauman suhteen.\n\nLisätietoja aineistoon kuuluvista datatyypeistä on alempana.\n\nSosiolingvistinen kysely:\nTaustatiedot kerättiin Language Attrition Test Battery (Schmid, 2011) -kokonaisuuteen kuuluvalla sosiolingvistisellä kyselyllä. Kysely koostuu 71 kysymyksestä, jotka sisältävät monenlaista itsearviointia puhujan kielihistoriasta, kielenkäytöstä, asenteista ja sidonnaisuuksista. Täydellinen kysely käyttö- ja analyysiohjeineen on saatavilla osoitteessa www.languageattrition.org. Aineiston koostaja käänsi kyselyn suomeksi ja tutkittavilla oli mahdollisuus vastata siihen joko suomeksi (N = 28) tai englanniksi (N = 10). Yksikieliselle kontrolliryhmälle esitettiin kyselystä sovitettu versio, jolla voitiin varmistua heidän suomen kielen arkikäytöstään. Varsinaisen kyselydatan lisäksi aineiston mukana on esimerkkejä kaikista kyselyistä. Vastaukset ovat taulukkomuotoisia.\n\nPuheäänitteet (suomi ja englanti):\nVapaan puheen näytteiden keruuseen käytettiin herätteenä 9 min 57 s kestoista mykkäelokuvan pätkää (osa Charlie Chaplinin \"Nykyaika\"-elokuvasta vuodelta 1936), josta puhujat saivat omin sanoin kertoa. Tehtävä tallennettiin amerikansuomalaiselta ryhmältä suomeksi (N=38) ja englanniksi (N=37) ja yksikieliseltä suomalaiselta ryhmältä suomeksi (N=50).\nLisäksi amerikansuomalaisen ryhmän osallistujia pyydettiin vapaaehtoisesti kertomaan suomeksi lyhyt tarina omasta maahanmuuttomatkastaan. Äänitallenteet näistä kertomuksista ovat mukana niiltä puhujilta, jotka ovat suostuneet tarinansa jakamiseen (N=38). Puhenäytteet ovat aineistossa äänitiedostoina.\n\nWUG-testi (suomeksi):\nWUG-testiä käytettiin, jotta voitiin arvioida, kuinka hyvin osallistujat hallitsevat taivutusmuotoja eri konteksteissa. WUG-testien tarkoitus on mitata morfologisten sääntöjen hallintaa pyytämällä osallistujia täydentämään epäsanoista koostuvia lauseita produktiivisten kielioppisääntöjen mukaisesti (Berko, 1958). Lähtökohtana käytettiin olemassa olevaa suomen morfologian WUG-testiä (Lyytinen 2003), ja lisäksi luotiin uusia kysymyksiä, joilla katettiin kaikki suomen sijamuodot (yhteensä 15 sijaa). Testissä oli kaikkiaan 90 lausetta, jotka esitettiin satunnaisessa järjestyksessä. Kunkin osallistujan testivastaukset ovat saatavilla äänitiedostona, jota vastaavat tehtävät tarjotaan tekstitiedostona. WUG-testin vastaukset ovat suomenkielisiä sekä amerikansuomalaisen (N=38) että yksikielisen suomalaisen (N=50) puhujaryhmän osalta."
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"fi": "Saamebarometri 2020 on Oikeusministeriön ja Giellagas-instituutin toteuttama kysely, jonka tavoitteena oli kartoittaa saamen kielilain toteutumista. Aineistossa selvitetään erityisesti saamenkielisten palveluiden saatavuutta, toimivuutta ja kehittämistarpeita sekä kielellisten oikeuksien toteutumista saamelaisten kotiseutualueella ja sen ulkopuolella Suomessa. Vuoden 2020 kyselyssä painotus on koulutus-, kulttuuri- ja vapaa-ajan palveluissa. Vastaajan kielitaitoa kartoitettiin kysymällä, kuinka hyvin vastaaja osaa kutakin kieltä (inarinsaame, koltansaame, pohjoissaame ja suomi) suullisesti, kirjallisesti ja ymmärtää sitä. Edelleen tiedusteltiin, missä yhteyksissä vastaaja on oppinut saamea (esim. lapsuudenkodissa, päivähoidossa, koulussa, aikuisiällä) sekä missä määrin hän käyttää saamea arjessa, työelämässä, perheen ja sukulaisten kanssa sekä viranomaisten kanssa asioidessa. Jos vastaajalla oli tai on ollut alaikäisiä lapsia, kysyttiin, mitä kieliä hän puhuu lapsilleen, millaisessa päivähoidossa lapset ovat olleet ja millä kielellä he käyvät koulua. Vastaajilta tiedusteltiin, kuinka hyvin he tuntevat kielelliset oikeutensa ja saamen kielilain sekä miten tärkeinä he pitävät kielellisiä oikeuksia. Kyselyssä kartoitettiin julkisten palveluiden (kunnalliset ja valtiolliset palvelut) saatavuutta ja toimivuutta saamen kielellä. Saamen kotiseutualueella asuvilta vastaajilta kysyttiin mm. kirjaston, kulttuuri- tai liikuntapalveluiden, päivähoidon ja perusopetuksen saatavuudesta ja toimivuudesta heidän puhumallaan saamen kielellä. Lisäksi tiedusteltiin, miten kunta tiedottaa toiminnastaan saamen kielellä. Vastaajilta kysyttiin myös, missä kunnan tai valtion toiminnoissa he ovat saaneet saamenkielistä palvelua ja missä palvelun lisääminen olisi heidän mielestään tärkeintä. Lisäksi tiedusteltiin, millaisiin toimiin kunnan tai valtion tulisi ryhtyä saamenkielisten palveluiden kehittämiseksi. Kyselyssä kartoitettiin myös kieli-ilmapiiriä kunnassa sekä mahdollisia syrjintä-, ennakkoluulo- tai häirintäkokemuksia saamen kielen käytön vuoksi. Taustatietoina aineistossa ovat vastaajan sukupuoli, syntymävuosi, koulutusaste, työmarkkina-asema, äidinkieli ja suuralue.",
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"en": "Abstract Background Application of microarrays in omics technologies enables quantification of many biomolecules simultaneously. It is widely applied to observe the positive or negative effect on biomolecule activity in perturbed versus the steady state by quantitative comparison. Community resources, such as Bioconductor and CRAN, host tools based on R language that have become standard for high-throughput analytics. However, application of these tools is technically challenging for generic users and require specific computational skills. There is a need for intuitive and easy-to-use platform to process omics data, visualize, and interpret results. Results We propose an integrated software solution, eUTOPIA, that implements a set of essential processing steps as a guided workflow presented to the user as an R Shiny application. Conclusions eUTOPIA allows researchers to perform preprocessing and analysis of microarray data via a simple and intuitive graphical interface while using state of the art methods."
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"en": "Abstract Background Copper oxide (CuO) nanomaterials are used in a wide range of industrial and commercial applications. These materials can be hazardous, especially if they are inhaled. As a result, the pulmonary effects of CuO nanomaterials have been studied in healthy subjects but limited knowledge exists today about their effects on lungs with allergic airway inflammation (AAI). The objective of this study was to investigate how pristine CuO modulates allergic lung inflammation and whether surface modifications can influence its reactivity. CuO and its carboxylated (CuO COOH), methylaminated (CuO NH3) and PEGylated (CuO PEG) derivatives were administered here on four consecutive days via oropharyngeal aspiration in a mouse model of AAI. Standard genome-wide gene expression profiling as well as conventional histopathological and immunological methods were used to investigate the modulatory effects of the nanomaterials on both healthy and compromised immune system. Results Our data demonstrates that although CuO materials did not considerably influence hallmarks of allergic airway inflammation, the materials exacerbated the existing lung inflammation by eliciting dramatic pulmonary neutrophilia. Transcriptomic analysis showed that CuO, CuO COOH and CuO NH3 commonly enriched neutrophil-related biological processes, especially in healthy mice. In sharp contrast, CuO PEG had a significantly lower potential in triggering changes in lungs of healthy and allergic mice revealing that surface PEGylation suppresses the effects triggered by the pristine material. Conclusions CuO as well as its functionalized forms worsen allergic airway inflammation by causing neutrophilia in the lungs, however, our results also show that surface PEGylation can be a promising approach for inhibiting the effects of pristine CuO. Our study provides information for health and safety assessment of modified CuO materials, and it can be useful in the development of nanomedical applications."
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"en": "Abstract Background Functional annotation of genes is an essential step in omics data analysis. Multiple databases and methods are currently available to summarize the functions of sets of genes into higher level representations, such as ontologies and molecular pathways. Annotating results from omics experiments into functional categories is essential not only to understand the underlying regulatory dynamics but also to compare multiple experimental conditions at a higher level of abstraction. Several tools are already available to the community to represent and compare functional profiles of omics experiments. However, when the number of experiments and/or enriched functional terms is high, it becomes difficult to interpret the results even when graphically represented. Therefore, there is currently a need for interactive and user-friendly tools to graphically navigate and further summarize annotations in order to facilitate results interpretation also when the dimensionality is high. Results We developed an approach that exploits the intrinsic hierarchical structure of several functional annotations to summarize the results obtained through enrichment analyses to higher levels of interpretation and to map gene related information at each summarized level. We built a user-friendly graphical interface that allows to visualize the functional annotations of one or multiple experiments at once. The tool is implemented as a R-Shiny application called FunMappOne and is available at https://github.com/grecolab/FunMappOne . Conclusion FunMappOne is a R-shiny graphical tool that takes in input multiple lists of human or mouse genes, optionally along with their related modification magnitudes, computes the enriched annotations from Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, or Reactome databases, and reports interactive maps of functional terms and pathways organized in rational groups. FunMappOne allows a fast and convenient comparison of multiple experiments and an easy way to interpret results."
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