HTTP 200 OK
Allow: GET, POST, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 7415,
"next": "https://metax.fairdata.fi/v3/datasets?format=api&limit=20&offset=240",
"previous": "https://metax.fairdata.fi/v3/datasets?format=api&limit=20&offset=200",
"results": [
{
"id": "306ad21c-9a8f-4fa5-8261-4527ccaf4d51",
"access_rights": {
"id": "35d04938-7b94-4e77-a8af-601a98f2c005",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "7f4f535f-cb01-4459-963e-b198027f3611",
"roles": [
"creator"
],
"person": {
"id": "bfa973c1-2ee8-4454-8858-8ba4c3003a6d",
"name": "Verronen, Pekka"
},
"organization": {
"id": "dc707cd4-7583-4aa0-ba10-8ff2c5672b16",
"pref_label": {
"en": "Finnish Meteorological Institute",
"fi": "Ilmatieteen laitos",
"sv": "Meteorologiska Institutet",
"und": "Ilmatieteen laitos"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/4940015",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "ce7cb9ab-6beb-449a-afd4-a19503e793eb",
"roles": [
"publisher"
],
"organization": {
"id": "dc707cd4-7583-4aa0-ba10-8ff2c5672b16",
"pref_label": {
"en": "Finnish Meteorological Institute",
"fi": "Ilmatieteen laitos",
"sv": "Meteorologiska Institutet",
"und": "Ilmatieteen laitos"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/4940015",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "bd1d3e14-f201-4613-8a3a-63099081e0d0",
"roles": [
"contributor"
],
"person": {
"id": "c6ce7c9f-a7dd-4140-a631-87604060fb36",
"name": "Verronen, Pekka",
"email": "<hidden>"
},
"organization": {
"id": "dc707cd4-7583-4aa0-ba10-8ff2c5672b16",
"pref_label": {
"en": "Finnish Meteorological Institute",
"fi": "Ilmatieteen laitos",
"sv": "Meteorologiska Institutet",
"und": "Ilmatieteen laitos"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/4940015",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-fmi",
"description": {
"en": "The set contains NO, CO, T, U, and ionisation rate data from Whole Atmosphere Community Climate Model simulations. Data for Souther Hemisphere, as well data for the Syowa ground station location are provided from global simulations from the time period between 2012-01-01 and 2017-12-31. The altitude range is from ground level up to about 140 km."
},
"field_of_science": [
{
"id": "7334f2e9-1aae-4b87-9088-8226211b06c9",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1171",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Geosciences",
"fi": "Geotieteet",
"sv": "Geovetenskaper"
}
},
{
"id": "5c3c9595-00d8-4318-9b1c-b80c2ec3c1be",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta999",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Other",
"fi": "Muut",
"sv": "Övrigt"
}
}
],
"infrastructure": [],
"issued": "2025-03-17",
"keyword": [
"Mesosphere, thermosphere, nitric oxide, Antarctica, atmospheric simulations",
"INSPIRE theme: climatologyMeteorologyAtmosphere"
],
"language": [
{
"id": "ec748146-3403-4a7f-adfe-bdbb1b889372",
"url": "http://lexvo.org/id/iso639-3/eng",
"in_scheme": "http://lexvo.org/id/",
"pref_label": {
"en": "English",
"fi": "englanti",
"sv": "engelska"
}
}
],
"metadata_owner": {
"id": "08d36e35-a86f-4c31-bb2b-c4d97398caa1",
"organization": "service_fmi"
},
"other_identifiers": [
{
"notation": "http://hdl.handle.net/11304/a8212b14-2db8-4635-b5b0-a5b837bbf89a",
"metax_ids": []
}
],
"persistent_identifier": "doi:10.57707/fmi-b2share.2060526dee334b819746263eee858f4e",
"pid_generated_by_fairdata": false,
"projects": [
{
"id": "8e189b63-049a-40a0-90d5-9be3d9f79e9a",
"title": {
"en": "WACCM simulation data from the manuscript \"Electron-Driven Variability of the Upper Atmospheric Nitric Oxide Column Density Over the Syowa Station in Antarctica\" by Verronen et al. 2025"
},
"participating_organizations": [
{
"id": "dc707cd4-7583-4aa0-ba10-8ff2c5672b16",
"pref_label": {
"en": "Finnish Meteorological Institute",
"fi": "Ilmatieteen laitos",
"sv": "Meteorologiska Institutet",
"und": "Ilmatieteen laitos"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/4940015",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
],
"funding": [
{
"funder": {
"organization": {
"id": "917adf10-25b9-4e7f-b45b-ae8a52095e34",
"pref_label": {
"en": "Research Council of Finland, GERACLIS project."
}
}
}
}
]
}
],
"provenance": [],
"relation": [],
"remote_resources": [
{
"title": {
"en": "WACCM-data-Syowa-study.mat"
},
"use_category": {
"id": "ed5844fc-6309-4a8f-98bb-e18c1aec9fdc",
"url": "http://uri.suomi.fi/codelist/fairdata/use_category/code/outcome",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/use_category",
"pref_label": {
"en": "Outcome material",
"fi": "Tulosaineisto"
}
},
"access_url": "https://fmi.b2share.csc.fi/records/2060526dee334b819746263eee858f4e"
},
{
"title": {
"en": "WACCM-data-Syowa-study.tgz"
},
"use_category": {
"id": "ed5844fc-6309-4a8f-98bb-e18c1aec9fdc",
"url": "http://uri.suomi.fi/codelist/fairdata/use_category/code/outcome",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/use_category",
"pref_label": {
"en": "Outcome material",
"fi": "Tulosaineisto"
}
},
"access_url": "https://fmi.b2share.csc.fi/records/2060526dee334b819746263eee858f4e"
},
{
"title": {
"en": "WACCM-data-Syowa-study.txt"
},
"use_category": {
"id": "ed5844fc-6309-4a8f-98bb-e18c1aec9fdc",
"url": "http://uri.suomi.fi/codelist/fairdata/use_category/code/outcome",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/use_category",
"pref_label": {
"en": "Outcome material",
"fi": "Tulosaineisto"
}
},
"access_url": "https://fmi.b2share.csc.fi/records/2060526dee334b819746263eee858f4e"
}
],
"spatial": [
{
"custom_wkt": [
"POLYGON ((180 90, -180 90, -180 -90, 180 -90, 180 90))"
]
}
],
"state": "published",
"temporal": [
{
"start_date": "2011-12-31",
"end_date": "2017-12-31"
}
],
"theme": [],
"title": {
"en": "WACCM simulation data from the manuscript \"Electron-Driven Variability of the Upper Atmospheric Nitric Oxide Column Density Over the Syowa Station in Antarctica\" by Verronen et al. 2025"
},
"created": "2025-03-18T00:02:06Z",
"modified": "2025-03-18T00:02:06Z",
"dataset_versions": [
{
"id": "306ad21c-9a8f-4fa5-8261-4527ccaf4d51",
"title": {
"en": "WACCM simulation data from the manuscript \"Electron-Driven Variability of the Upper Atmospheric Nitric Oxide Column Density Over the Syowa Station in Antarctica\" by Verronen et al. 2025"
},
"persistent_identifier": "doi:10.57707/fmi-b2share.2060526dee334b819746263eee858f4e",
"state": "published",
"created": "2025-03-18T00:02:06Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "e3254794-0e2a-444e-ac5b-15a0178c6dbc",
"access_rights": {
"id": "dcbc0a49-f630-4450-9440-9869ecc8f46b",
"license": [
{
"id": "6142d0c6-945d-4085-b9f7-81e52afa253b",
"custom_url": "https://creativecommons.org/licenses/by/4.0/",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/other",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Other",
"fi": "Muu"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "81a14e18-0549-4376-a0db-21bc57583d58",
"roles": [
"creator",
"publisher"
],
"person": {
"id": "a170455e-38d9-4a4e-9825-a7e0f45c7a4f",
"name": "Diego Rondon",
"email": "<hidden>"
},
"organization": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "bc33f389-b4d0-4fa3-81eb-5fa9fbb9f6e9",
"roles": [
"creator"
],
"person": {
"id": "60a3bbf0-3d51-443c-b0aa-7ebf883afa3a",
"name": "Mikko J. Sillanpää",
"email": "<hidden>",
"external_identifier": "https://orcid.org/0000-0003-2808-2768"
},
"organization": {
"id": "8060ca96-d1ef-4634-bfbe-887a2fe846f7",
"pref_label": {
"en": "Matemaattisten tieteiden tutkimusyksikkö",
"fi": "Matemaattisten tieteiden tutkimusyksikkö",
"sv": "Matemaattisten tieteiden tutkimusyksikkö",
"und": "Matemaattisten tieteiden tutkimusyksikkö"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402070",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "fcb7f1a5-ad93-4f70-a2ef-b6197fd3373b",
"roles": [
"creator"
],
"person": {
"id": "b39b77b2-7854-488f-9a63-f147a80d6945",
"name": "Laura Kvist",
"email": "<hidden>",
"external_identifier": "https://orcid.org/0000-0002-2108-0172"
},
"organization": {
"id": "e006ba17-acc0-4bde-bc34-f27563b7dd84",
"pref_label": {
"en": "Ekologian ja genetiikan tutkimusyksikkö",
"fi": "Ekologian ja genetiikan tutkimusyksikkö",
"sv": "Ekologian ja genetiikan tutkimusyksikkö",
"und": "Ekologian ja genetiikan tutkimusyksikkö"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402130",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "b302c621-4363-433f-aba6-e42ba997b3ad",
"roles": [
"creator"
],
"person": {
"id": "a63a80a0-23b1-48e4-b6cd-f68f3ce65822",
"name": "Jouni Aspi",
"email": "<hidden>",
"external_identifier": "https://orcid.org/0000-0002-2451-3201"
},
"organization": {
"id": "e006ba17-acc0-4bde-bc34-f27563b7dd84",
"pref_label": {
"en": "Ekologian ja genetiikan tutkimusyksikkö",
"fi": "Ekologian ja genetiikan tutkimusyksikkö",
"sv": "Ekologian ja genetiikan tutkimusyksikkö",
"und": "Ekologian ja genetiikan tutkimusyksikkö"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402130",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "d584b177-4158-41dc-8626-4868283c9bdf",
"roles": [
"creator"
],
"person": {
"id": "cc9146d0-d6e1-4cdb-8397-0002c2c29126",
"name": "Samu Mäntyniemi",
"email": "<hidden>",
"external_identifier": "https://orcid.org/0000-0002-3367-6280"
},
"organization": {
"id": "b941a6eb-d7ba-4261-aa8b-eb5cf98f709c",
"pref_label": {
"en": "Natural Resources Institute Finland",
"fi": "Luonnonvarakeskus",
"sv": "Naturresursinstitutet",
"und": "Luonnonvarakeskus"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/4100010",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-ida",
"description": {
"en": "Diego Rondon, Samu Mantyniemi, Jouni Aspi, Laura Kvist, Mikko J Sillanpaa\n\nCode and data for the simulation and analysis\n## 1_Simualiton \nContain the function (1_Simulation_Functions.R) and simulation algorithm (2_Simulation.R) that creates the populations. \n The results of the population are un the files SCN_Bottleneck.RData and SCN_Decline.RData\n \n## 2_NIMBLE_Model\nContain the algorithm that reads the data set of interest, sample a population at a given observation probability (40%, 60% or 80%), perform the data augmentation and performs the MCMC\n Each MCMC takes 20 hours to run. \n\n\n## 3_MCMC_Results\nMCMC output is divided into scenarios -> covariate treatment -> sampling probability, each one with 50 MCMC output containing 3 chains each"
},
"field_of_science": [
{
"id": "fa11492f-0090-4ba8-abdc-f001a7e7fbc2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta112",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Statistics and probability",
"fi": "Tilastotiede",
"sv": "Statistik"
}
}
],
"fileset": {
"storage_service": "ida",
"csc_project": "2008608",
"total_files_count": 711,
"total_files_size": 43395786900
},
"infrastructure": [],
"issued": "2024-02-26",
"keyword": [
"Hidden Markov model",
"Data Augmentation",
"Multi-state model",
"Inbreeding",
"survival"
],
"language": [
{
"id": "ec748146-3403-4a7f-adfe-bdbb1b889372",
"url": "http://lexvo.org/id/iso639-3/eng",
"in_scheme": "http://lexvo.org/id/",
"pref_label": {
"en": "English",
"fi": "englanti",
"sv": "engelska"
}
}
],
"metadata_owner": {
"id": "e0d3afa4-e935-4945-9511-6c8af427a77c",
"organization": "oulu.fi"
},
"other_identifiers": [],
"persistent_identifier": "urn:nbn:fi:att:b0c35d23-6727-4ae1-88eb-1c58cf18b7a7",
"pid_generated_by_fairdata": true,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "A Bayesian Multi-State Model With Data Augmentation for Estimating Population Size and Effect of Inbreeding on Survival"
},
"created": "2024-02-26T15:53:56Z",
"modified": "2025-03-17T16:14:30Z",
"dataset_versions": [
{
"id": "e3254794-0e2a-444e-ac5b-15a0178c6dbc",
"title": {
"en": "A Bayesian Multi-State Model With Data Augmentation for Estimating Population Size and Effect of Inbreeding on Survival"
},
"persistent_identifier": "urn:nbn:fi:att:b0c35d23-6727-4ae1-88eb-1c58cf18b7a7",
"state": "published",
"created": "2024-02-26T15:53:56Z",
"version": 1
}
],
"published_revision": 2,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "842dddf3-03ee-427e-a96a-c60d6eb90fa0",
"access_rights": {
"id": "165a753b-47e7-40b4-bfee-3d68e3be546a",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"custom_url": "https://creativecommons.org/licenses/by/4.0/",
"title": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)",
"und": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
},
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "152a2284-48b4-4824-b1db-a5303307e5c1",
"roles": [
"creator"
],
"person": {
"id": "aecc9328-95d7-4f7b-a278-d4976a1d057d",
"name": "Florian Feist"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "021e6ff1-1647-47c8-afa6-ed92c6b3b993",
"roles": [
"creator"
],
"person": {
"id": "b17931c1-768c-4b7e-bd16-983a1929bd0b",
"name": "Markus Wagner"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "1eff5028-34a1-463a-8e7f-378b361b544b",
"roles": [
"creator"
],
"person": {
"id": "933f32a3-1dde-4086-b890-fe3131ae4d13",
"name": "Georg Baumann"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "508d951b-96ed-4f02-87a4-ae7f33261fa8",
"roles": [
"creator"
],
"person": {
"id": "364a7708-19be-4e2e-b490-567f3dd5238e",
"name": "Stefan Spirk"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "099bccd8-5255-4b97-b188-1c024eca4fbf",
"roles": [
"creator"
],
"person": {
"id": "11d5e1e2-0403-47e4-96d3-22a1565d7d38",
"name": "Veronika Biegler"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "ba9715b7-d2e1-4eca-83f5-0ba69395b727",
"roles": [
"creator"
],
"person": {
"id": "fb65549c-b03b-4cb7-b051-815e9f2462ea",
"name": "Qixiang Jiang"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "692596a9-a8f0-4353-8472-cef4fe420ada",
"roles": [
"creator"
],
"person": {
"id": "259d8bd6-e4ef-4eb6-a0fc-42e292aa9ada",
"name": "Tiina Nypelö",
"external_identifier": "https://orcid.org/0000-0003-0158-467X"
},
"organization": {
"id": "9c6c9aea-29dd-4d50-8e25-6282819ed78d",
"pref_label": {
"en": "Department of Bioproducts and Biosystems",
"fi": "Department of Bioproducts and Biosystems",
"sv": "Department of Bioproducts and Biosystems",
"und": "Department of Bioproducts and Biosystems"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076-T107",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "7d61af1c-0cc6-46fe-9940-21da2b080cb3",
"pref_label": {
"en": "Aalto University",
"fi": "Aalto-yliopisto",
"sv": "Aalto-universitetet",
"und": "Aalto-yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10076",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "f0027353-977f-4aec-8d0d-1c8346d34a25",
"roles": [
"publisher"
],
"organization": {
"id": "f12e2206-323d-4b59-b02f-4a51798cd863",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
},
{
"id": "1e99bb3d-345a-4a18-8c97-a6e416e6ca0e",
"roles": [
"contributor"
],
"organization": {
"id": "bca7320e-259d-4e05-93e9-8b57d064ca22",
"pref_label": {
"en": "Graz University of Technology",
"fi": "Graz University of Technology",
"sv": "Graz University of Technology"
}
}
},
{
"id": "875b3c1f-d89f-42ce-aa33-23403b3d212d",
"roles": [
"contributor"
],
"organization": {
"id": "22e79d84-d15e-4b33-a02b-c0c8a7dee27d",
"pref_label": {
"en": "University of Vienna",
"fi": "University of Vienna",
"sv": "University of Vienna"
}
}
},
{
"id": "dcc9c8d6-760f-4ca2-aea8-01ecf571965c",
"roles": [
"contributor"
],
"organization": {
"id": "07e01f10-7d5a-49d3-8946-0a8182f18340",
"pref_label": {
"en": "Chalmers University of Technology",
"fi": "Chalmers University of Technology",
"sv": "Chalmers University of Technology"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-acris",
"description": {
"en": "This dataset contains the simualtion input files for the publication: \"A Cellulosic Fibre Foam as a Bicycle Helmet Impact Liner for Brain Injury Mitigation in Oblique Impact\" [10.1016/j.heliyon.2024.e40790]. This includes the impact configrations and all utilized material models for pulp fibre foams and the EPS reference foam."
},
"field_of_science": [
{
"id": "58c407dd-b614-4d38-a92a-e6d9cdff7814",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta216",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Materials engineering",
"fi": "Materiaalitekniikka",
"sv": "Materialteknik"
}
}
],
"infrastructure": [],
"issued": "2024-11-30",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "fce90ccd-e305-45f9-90b3-1e462f048c9a",
"organization": "aalto.fi"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.15018019",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [
{
"title": {
"en": "Data in remote location"
},
"use_category": {
"id": "d91e6ce8-6567-441e-96e8-9d706570a677",
"url": "http://uri.suomi.fi/codelist/fairdata/use_category/code/source",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/use_category",
"pref_label": {
"en": "Source material",
"fi": "Lähdeaineisto"
}
},
"download_url": "https://zenodo.org/records/15018020"
}
],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Simulation Input data for: A Cellulosic Fibre Foam as a Bicycle Helmet Impact Liner for Brain Injury Mitigation in Oblique Impact"
},
"created": "2025-03-18T00:00:10Z",
"modified": "2025-03-17T06:01:39Z",
"dataset_versions": [
{
"id": "842dddf3-03ee-427e-a96a-c60d6eb90fa0",
"title": {
"en": "Simulation Input data for: A Cellulosic Fibre Foam as a Bicycle Helmet Impact Liner for Brain Injury Mitigation in Oblique Impact"
},
"persistent_identifier": "doi:10.5281/zenodo.15018019",
"state": "published",
"created": "2025-03-18T00:00:10Z",
"version": 1
}
],
"published_revision": 5,
"version": 1,
"api_version": 2,
"metadata_repository": "Fairdata"
},
{
"id": "f3ec69a5-79a1-476c-97d0-0eb769e6280d",
"access_rights": {
"id": "9071d180-5c93-4162-9fb7-d12c66c820f3",
"license": [
{
"id": "60ce96ab-a581-4225-a652-bad746a435a2",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/notspecified",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "License Not Specified",
"fi": "Ei määritelty"
}
}
],
"access_type": {
"id": "729ffd9f-6d7a-40e9-aa97-a363a16fd113",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/restricted",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Restricted use",
"fi": "Saatavuutta rajoitettu"
}
},
"restriction_grounds": [
{
"id": "0ed3a2e1-6c11-4278-af67-c6713f838ecd",
"url": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds/code/other",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds",
"pref_label": {
"en": "Restricted access due to other reasons",
"fi": "Saatavuutta rajoitettu muulla perusteella",
"sv": "Begränsad åtkomst av övriga skäl"
}
}
]
},
"actors": [
{
"id": "1e83f1e8-72aa-4a42-8708-7a7d520ef8c1",
"roles": [
"creator"
],
"person": {
"id": "dab19a1c-807d-4ae1-b614-e01dfd850fe5",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c97e47cb-6c5c-4b85-a481-548524a41209",
"roles": [
"publisher"
],
"organization": {
"id": "7ec975d6-68b3-4bd7-98de-e0942fb32ba5",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Datasets for I2K 2024 - Object Tracking and Track Analysis using TrackMate and CellTracksColab -workshop Course walk through: I2K_2024: https://github.com/CellMigrationLab/I2K_2024 V4SBD_Winter_school_2025: https://github.com/CellMigrationLab/V4SDB_Winter_School_2025"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2025-01-14",
"keyword": [
"Biochemistry and Cell Biology"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.14645477",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "I2K 2024 - Object Tracking and Track Analysis using TrackMate and CellTracksColab"
},
"created": "2025-03-17T05:58:45Z",
"modified": "2025-03-17T05:58:45Z",
"dataset_versions": [
{
"id": "f3ec69a5-79a1-476c-97d0-0eb769e6280d",
"title": {
"en": "I2K 2024 - Object Tracking and Track Analysis using TrackMate and CellTracksColab"
},
"persistent_identifier": "doi:10.5281/zenodo.14645477",
"state": "published",
"created": "2025-03-17T05:58:45Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "0065dc41-13d3-4da0-b323-22d2482b4d86",
"access_rights": {
"id": "4205fb3d-ecaa-40c7-87c5-598f6387b381",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "e589f21e-dc05-4912-bb47-c9dafd1a3a0c",
"roles": [
"creator"
],
"person": {
"id": "18d80b9a-e1ab-4775-be67-9290835e6f3f",
"name": "Chuqing Jiang"
},
"organization": {
"id": "0ebb90a5-7cb8-4bfa-9b93-5330964a0f43",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "1d23e949-643b-49f2-aee7-f7c43b209986",
"roles": [
"contributor"
],
"person": {
"id": "64b0de30-62fe-4a44-8ddd-7bdb34d801c2",
"name": "Hellen Silva Santos"
},
"organization": {
"id": "0ebb90a5-7cb8-4bfa-9b93-5330964a0f43",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "7ee61fb9-a158-4ff6-adce-d1020d4986b7",
"roles": [
"contributor"
],
"person": {
"id": "77cf817a-e70c-468d-9547-5ca4e691d777",
"name": "Juho Yliniemi"
},
"organization": {
"id": "0ebb90a5-7cb8-4bfa-9b93-5330964a0f43",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "1009e77d-76f9-4083-8543-092b4d1fc7a5",
"roles": [
"contributor"
],
"person": {
"id": "4ebaaac7-6279-4718-8b59-2574f08fd330",
"name": "Johan Lindén",
"external_identifier": "https://orcid.org/0000-0002-6155-3026"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "e612b8c2-544a-49b0-b8e7-d4100f69f586",
"roles": [
"contributor"
],
"person": {
"id": "641f006e-9cc9-48ff-81a9-8878ed76aeb7",
"name": "Durgaprasad Ramteke"
},
"organization": {
"id": "0ebb90a5-7cb8-4bfa-9b93-5330964a0f43",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "b2dc9e9f-d9ea-496b-a97e-b2998231c935",
"roles": [
"contributor"
],
"person": {
"id": "fadcb767-6474-4c69-8508-5717b95f6729",
"name": "Mirja Illikainen"
},
"organization": {
"id": "79fe82b0-6165-4fa7-ba24-02c25b55e799",
"pref_label": {
"en": "Oulun Yliopisto Teknillinen Tiedekunta"
}
}
},
{
"id": "57d86893-e800-475b-a3b6-b5bb10fe497a",
"roles": [
"contributor"
],
"person": {
"id": "54e34a44-bd43-4edd-8a54-858cc02e95a8",
"name": "Christopher Cheeseman"
},
"organization": {
"id": "0fe1a021-8d80-42d6-b1e9-14339fa22121",
"pref_label": {
"en": "Imperial College London",
"fi": "Imperial College London",
"sv": "Imperial College London"
},
"external_identifier": "https://ror.org/041kmwe10"
}
},
{
"id": "b0e0bfc7-2d95-4311-8d2c-83b5ff85eb98",
"roles": [
"contributor"
],
"person": {
"id": "5dbf6d25-11f6-4c28-8a42-9eb9c6720334",
"name": "Paivo Kinnunen"
},
"organization": {
"id": "0ebb90a5-7cb8-4bfa-9b93-5330964a0f43",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "44f5b6bf-2cd7-47cf-a905-142766f82f39",
"roles": [
"publisher"
],
"organization": {
"id": "301a852d-5712-40be-b53e-ed6010608d74",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "The enclosed raw data files include various formats from multiple characterization techniques, covering XPS, BET SSA, XRF, SEM-EDS, ICP, FTIR, XRD, PSD, DSC-TG, TEM-EDS, and Mössbauer analyses. The formats and file details are as follows: XPS: Provided in .VGD format. BET SSA: Available in .xls and .xps formats. XRF: Data provided in .xlsx format, with filenames containing 'XRF'. SEM-EDS: Reports included in .xlsx format. ICP: Data listed in .pdf format, with filenames including the date and project information. FTIR: Raw data included in .dpt files. XRD: Data provided in .raw and .xrdml formats. PSD: Included in .pdf and .xlsx files, with filenames containing 'PSD'. DSC-TG: Data available in .xls files, with filenames indicating 'DSC_TG'. TEM-EDS: Elemental maps provided in .jpg and .bmp formats. Mössbauer: Raw data provided in .plt files. Please note that the percentages in the sample names do not correspond directly to the final sample codes (e.g., 25% does not equate to the final G25 sample). This discrepancy has been corrected based on the XRF results. For clarity, refer to the file 'Chuqing Jiang Fe-Mg-Si XRF 04-04-2023 - raw data and calculation.xlsx', which includes detailed renaming of the samples."
},
"field_of_science": [
{
"id": "7e12a692-26de-4e3c-b28c-64f8a32ef40a",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta114",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Physical sciences",
"fi": "Fysiikka",
"sv": "Fysik"
}
}
],
"infrastructure": [],
"issued": "2024-12-02",
"keyword": [
"reactivity",
"phase separation",
"glass",
"magnesium silicate glasses",
"supplementary cementitious materials (SCMs)",
"sustainability",
"sol-gel"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.14246011",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Fe-bearing magnesium silicate glasses for potential supplementary cementitious applications"
},
"created": "2025-03-17T05:58:38Z",
"modified": "2025-03-17T05:58:38Z",
"dataset_versions": [
{
"id": "0065dc41-13d3-4da0-b323-22d2482b4d86",
"title": {
"en": "Fe-bearing magnesium silicate glasses for potential supplementary cementitious applications"
},
"persistent_identifier": "doi:10.5281/zenodo.14246011",
"state": "published",
"created": "2025-03-17T05:58:38Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "700c8a27-fac5-4d11-bab7-7a804c5585a6",
"access_rights": {
"id": "b6517adf-28d5-449d-b74a-cf5c8bd8fb25",
"license": [
{
"id": "bff034cd-9bf2-420e-80a3-a6b7e075b6e5",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-NC-SA-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)",
"fi": "Creative Commons Nimeä-EiKaupallinen-JaaSamoin 4.0 Kansainvälinen (CC BY-NC-SA 4.0) "
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "8ec49f2d-99c9-463d-a79e-9085c0c04fe7",
"roles": [
"creator"
],
"person": {
"id": "f2748582-9538-4e2a-ab07-91330a4d977f",
"name": "Phoebe Armitage",
"external_identifier": "https://orcid.org/0000-0001-9411-2270"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "7a04351a-f413-4a15-bca6-309be9d846fe",
"roles": [
"creator"
],
"person": {
"id": "5d451f28-f22c-405e-81da-c588c2f6017b",
"name": "Michael Burrows"
},
"organization": {
"id": "fad33b67-d0ea-48fc-bb92-62fabacf4975",
"pref_label": {
"en": "Scottish Association For Marine Science",
"fi": "Scottish Association For Marine Science",
"sv": "Scottish Association For Marine Science"
},
"external_identifier": "https://ror.org/04ke6ht85"
}
},
{
"id": "3c630c71-816a-4ed6-8a98-f3eb3f162c18",
"roles": [
"creator"
],
"person": {
"id": "ff1fdca8-5489-484a-b281-3149afafb462",
"name": "James Rimmer"
},
"organization": {
"id": "76b0805f-384f-4172-aad2-c25272ec7a6c",
"pref_label": {
"en": "University of St Andrews",
"fi": "University of St Andrews",
"sv": "University of St Andrews"
},
"external_identifier": "https://ror.org/02wn5qz54"
}
},
{
"id": "672e7d97-ae7f-466d-824d-778347c196ad",
"roles": [
"creator"
],
"person": {
"id": "4a843364-9bc9-4e0f-afbb-ade578f58933",
"name": "Andrew John Blight"
},
"organization": {
"id": "76b0805f-384f-4172-aad2-c25272ec7a6c",
"pref_label": {
"en": "University of St Andrews",
"fi": "University of St Andrews",
"sv": "University of St Andrews"
},
"external_identifier": "https://ror.org/02wn5qz54"
}
},
{
"id": "223b81d2-f131-49c8-92f2-489de0f0c4e9",
"roles": [
"publisher"
],
"organization": {
"id": "4475ba16-bdc7-470a-b126-05546b0db120",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "The primary data forms part of an ongoing monitoring programme by the Shetland Oil Terminal Environmental Advisory Group (SOTEAG). SOTEAG has undertaken biennial benthic surveys in Sullom Voe and the surrounding areas since 1974 to determine the status of infaunal communities and seafloor sediments. For more information on SOTEAG and the types of monitoring they practice please see: https://soteag.org.uk/. A full description of sampling methods can be found here: https://soteag.org.uk/environmental-monitoring/monitoring-reports/ These published data are a subset of the original SOTEAG data. They were used in a 32-year analysis of benthic infaunal invertebrates to investigate changes in species and trait composition, as well as detect long-term temperature-related shifts in benthic species and communities. The manuscript is entitled “Multidecadal changes in coastal benthic species composition and ecosystem functioning occur independently of temperature-driven community shifts” by Armitage et al., 2024. It should be noted that many of these data are a subset of the original and may have been transformed or standardised for statistical analyses. Below is a description of each .csv file, and whether the data are primary or secondary data, and how they are used in the analyses for the published paper. For details on how the data were reduced, please see the publication. In summary, a total of 15 stations were selected with a biennial year range of 1986 – 2018. The depth range covered 4 – 58m, where stations were classified into shallow, intermediate, and deep depth groups. Env.csv Primary data: The environmental data that were collected during sampling by SOTEAG. The data are in long format with each column denoting: Station, Year, Water depth (m), Gravel %, Sand %, Mud %, Grain size, Water temperature (ᵒC), and water salinity. Indices.csv Secondary data: These data are the various species and functional indices created from an analysis using species and trait data. The data are in long format and have row names consisting of the station and year, as well as column headings species richness (sp.rich), total species abundance (abundance) species diversity: Shannon (shannon), species diversity: Simpson (simpson), species evenness (evenness), functional richness (FRic), functional evenneness (FEve), functional diversity, also knowns as dispersion (FDis), functional redundancy (Red) species vulnerability (Vul), sampled station (Station), year of sampling (Year), classified depth group (Depth_group), and the decade (Decade). Species.csv Primary data: This is the SOTEAG species abundance/community list that has been reduced (rare species were removed, a subset of stations were selected, and data were averaged and standardised across replicates). Species_classification_all.csv Secondary data: This is extra supporting information for the species list highlighting the taxonomic ranking (coloumns) and species (rows). STI_and_EcoFun_per_sp.csv Secondary data: This is data produced from a combination of species abundance and traits. The first two columns are row ID and species names. Columns 3-12 describe five ecosystem functions with the calculations/methodology provided in the publication. These data show the mean and scaled (0-1) scores for each function. The column headings equate to bioturbation (Bio), sediment stability (Sed), nutrient recycling (NutR), low trophic position (lowTP), high trophic position (highTP). The following columns X0 – X100 represent the quantiles of temperature affinities, with 50 being the 50% mark. The last column is the number of records (nrec) related to the thermal affinity search. STImacroSoteag.csv Secondary data: Species thermal affinities (methods described in publication) with the first two columns as row ID and species names. The following columns X0 – X100 represent the quantiles of temperature affinities, with 50 being the 50% mark. The last column is the number of records (nrec) related to the thermal affinity search. Traits.csv Primary data: Trait data where each species is listed as a row and traits as a coloumn heading. For trait column names please see publication. Note that the ranges of scores given to a species affinity to a trait is 0-3, which may be split depening on the affinity of the species (i.e., fuzzy coding). Traits_EcoF.csv Secondary data: This is data produced from a combination of species abundance and traits. The first two columns are row ID and species names. Columns represent the trait used for the calculation of the Ecosystem Function (please see equations 2 – 6 in the publication). The column headings equate to bioturbation (Bio), sediment stability (Sed), nutrient recycling (NutR), low trophic position (lowTP), high trophic position (highTP), while the trait abbreviations can be found in Table 1 of the publication. The scores follow the fuzzy coding approach highlighted above (Traits.csv). TrendsVsSTIHats.csv Secondary data: Results from species thermal index analysis and used to plot figure 4 of the main publication. Data is in long format. tsSSTdata.csv Primary data: Sea surface temperatures used in the species distribution model to fit species thermal indices. See publication for details (section 2.3). Vulnerability.csv Secondary data: A species index that was a result from the main species abundance/community data. Index values are given for each species (rows) by station/year (columns). Community means of the index can be found in “indices.csv”."
},
"field_of_science": [
{
"id": "ea57f07d-16d8-4c7a-8a52-39ef1112278a",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1181",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Ecology, evolutionary biology",
"fi": "Ekologia, evoluutiobiologia",
"sv": "Ekologi, evolutionsbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-06",
"keyword": [
"Evolutionary Biology",
"coastal benthic species",
"change"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13235944",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Armitage et al., 2024. Multidecadal changes in coastal benthic species (primary and secondary data: SOTEAG)"
},
"created": "2025-03-17T05:58:36Z",
"modified": "2025-03-17T05:58:36Z",
"dataset_versions": [
{
"id": "700c8a27-fac5-4d11-bab7-7a804c5585a6",
"title": {
"en": "Armitage et al., 2024. Multidecadal changes in coastal benthic species (primary and secondary data: SOTEAG)"
},
"persistent_identifier": "doi:10.5281/zenodo.13235944",
"state": "published",
"created": "2025-03-17T05:58:36Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "7a6f4442-ff9a-4d11-8e9e-f904fdf15a6e",
"access_rights": {
"id": "82aac316-5770-4aed-a9ef-d60cdffd77db",
"license": [
{
"id": "9f8e151c-af07-44f6-8104-a30b68fc2b3c",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC0-1.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication",
"fi": "Creative Commons Yleismaailmallinen (CC0 1.0) Public Domain -lausuma"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "f5bca8b8-f0b6-460f-b136-3f366ea1c9bf",
"roles": [
"creator"
],
"person": {
"id": "11443a1e-93a5-4a11-827b-40b8c66939e9",
"name": "Carsten Anckar",
"external_identifier": "https://orcid.org/0000-0003-3812-2014"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "2938fc20-5da9-48ef-a0c3-fae1857b2e3a",
"roles": [
"creator"
],
"person": {
"id": "b57ebdcd-1ca4-47a2-82c2-b591fa39af5d",
"name": "Thomas Denk"
},
"organization": {
"id": "b3c551c7-0402-4288-8449-08f06eb25bdc",
"pref_label": {
"en": "Örebro University",
"fi": "Örebron yliopisto",
"sv": "Örebro universitet"
},
"external_identifier": "https://ror.org/05kytsw45"
}
},
{
"id": "5ff841ba-ec90-44bb-b556-17a381b32c5e",
"roles": [
"contributor"
],
"person": {
"id": "932222f1-05d1-4617-80bb-6fe4622babd5",
"name": "Carsten Anckar"
},
"organization": {
"id": "4a29eb2e-4ba6-4798-a6a6-dc3db853e2d6",
"pref_label": {
"en": "Åbo Akademi University"
}
}
},
{
"id": "c7bd6ff1-de36-4083-b0fa-7a56a7c12c09",
"roles": [
"publisher"
],
"organization": {
"id": "757f7c16-744a-4d91-8473-7264b7b045fe",
"pref_label": {
"en": "Harvard Dataverse",
"fi": "Harvard Dataverse",
"sv": "Harvard Dataverse"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "We provide a yearly categorization of death penalty status as well as changes of the status in the world. The database covers the period 1800-2022 for all currently independent countries in the world."
},
"field_of_science": [
{
"id": "df60b812-8951-4f38-944d-a1eff560ad85",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta517",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Political science",
"fi": "Valtio-oppi, hallintotiede",
"sv": "Statsvetenskap"
}
}
],
"infrastructure": [],
"issued": "2024-06-05",
"keyword": [
"Social Sciences"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.7910/dvn/li3wyk",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Comparative Death Penalty Database"
},
"created": "2025-03-17T05:58:34Z",
"modified": "2025-03-17T05:58:34Z",
"dataset_versions": [
{
"id": "7a6f4442-ff9a-4d11-8e9e-f904fdf15a6e",
"title": {
"en": "Comparative Death Penalty Database"
},
"persistent_identifier": "doi:10.7910/dvn/li3wyk",
"state": "published",
"created": "2025-03-17T05:58:34Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "93205649-9ec8-431a-8852-3abf27d9001f",
"access_rights": {
"id": "9c37994c-a999-4295-acaa-ad3367165f54",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "01510978-25e3-4a33-9896-566de22dd928",
"roles": [
"creator"
],
"person": {
"id": "ccf10461-3f03-4e96-b042-f85af9be6a5c",
"name": "Zhuzhuna Gviniashvili",
"external_identifier": "https://orcid.org/0000-0003-1651-4105"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "8859ae26-ece0-41cb-acc7-f27606e50353",
"roles": [
"publisher"
],
"organization": {
"id": "f38b3800-e44d-42f4-a1da-fcfe636ce41d",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This data note presents a dataset, collected from Finnish and Georgian school adolescents, regarding to their attitudes and intentions towards recreational reading. The data is collected from 111 participants, from which 38% is profoundly deaf. The dataset encompasses the raw data from 5-point Likert Scale questioner, the survey, interview protocol and focus group interviews."
},
"field_of_science": [
{
"id": "d6d3fdd1-109b-4be3-8d50-782bc474d514",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta516",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Educational sciences",
"fi": "Kasvatustieteet",
"sv": "Pedagogik"
}
}
],
"infrastructure": [],
"issued": "2024-11-08",
"keyword": [
"attitudes",
"intention",
"hearing",
"deaf",
"recreational reading",
"reading"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13612818",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Recreational Reading as a Leisure Activity: Perspectives from Georgian and Finnish Hearing and deaf students"
},
"created": "2025-03-17T05:58:32Z",
"modified": "2025-03-17T05:58:32Z",
"dataset_versions": [
{
"id": "93205649-9ec8-431a-8852-3abf27d9001f",
"title": {
"en": "Recreational Reading as a Leisure Activity: Perspectives from Georgian and Finnish Hearing and deaf students"
},
"persistent_identifier": "doi:10.5281/zenodo.13612818",
"state": "published",
"created": "2025-03-17T05:58:32Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "44a1f7b1-ec1a-4884-9d92-7fd3ccbb7b23",
"access_rights": {
"id": "fa820fd8-7923-4dd5-8c78-5adb63f1ec8d",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "43720e8a-af93-458f-af21-3c6f16ea1d47",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/embargo",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Embargo",
"fi": "Embargo"
}
},
"restriction_grounds": [
{
"id": "0ed3a2e1-6c11-4278-af67-c6713f838ecd",
"url": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds/code/other",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds",
"pref_label": {
"en": "Restricted access due to other reasons",
"fi": "Saatavuutta rajoitettu muulla perusteella",
"sv": "Begränsad åtkomst av övriga skäl"
}
}
]
},
"actors": [
{
"id": "7104799e-da64-47c4-9c7c-54fa39f14993",
"roles": [
"creator"
],
"person": {
"id": "3338c1d9-a7b5-4191-b9dc-1424dd175b6e",
"name": "Tomi Airenne",
"external_identifier": "https://orcid.org/0000-0001-9645-8670"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "81b875ed-ab4a-4f1f-bf49-d63c9806fbd3",
"roles": [
"creator"
],
"person": {
"id": "c2bef369-e30d-400e-9f88-a00a17215007",
"name": "Rajendra Bhadane",
"external_identifier": "https://orcid.org/0000-0002-7330-4801"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "eacbd4f3-e42f-4fe0-af3d-1bc3ed07d704",
"roles": [
"creator"
],
"person": {
"id": "2cc7913c-fa0f-4836-ac8d-a8c3e696f7b3",
"name": "Pedro Dinis"
},
"organization": {
"id": "2d2f5902-4041-474d-b2df-9ad04e0a996c",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "5afaacd4-64c1-4dc5-ac3f-627644eea658",
"roles": [
"creator"
],
"person": {
"id": "d32e2e9f-e0d1-4d7c-9f4f-68d0b48f00b6",
"name": "Thi Hoai Men Duong"
},
"organization": {
"id": "220e80c8-8897-4d9d-8f8f-ed9e9d47a077",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "872dd761-72ed-429a-a8a0-6f2ad638cf68",
"roles": [
"creator"
],
"person": {
"id": "fa567402-2c50-4423-b70d-e5b312a21d3c",
"name": "Mikko Huhtala"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "4daa36e6-401f-41da-a599-48b94f986631",
"roles": [
"creator"
],
"person": {
"id": "bad87121-c1f2-4a18-b871-64e23bbd9198",
"name": "Mikael Ilomäki"
},
"organization": {
"id": "80e54f04-f766-48ad-98a4-c20cd8d69894",
"pref_label": {
"en": "Abo Akademi University"
}
}
},
{
"id": "860d8993-8035-4033-9f5f-4dd144921313",
"roles": [
"creator"
],
"person": {
"id": "1d760791-840d-45c8-bacd-24c8220a6c07",
"name": "Aleksi Nuutila"
},
"organization": {
"id": "2d2f5902-4041-474d-b2df-9ad04e0a996c",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "40bebbfe-2d23-4f80-8e87-d309d36b7aa8",
"roles": [
"creator"
],
"person": {
"id": "63a73ce2-cc45-49a0-bebf-994368721135",
"name": "Johan Pääkkönen"
},
"organization": {
"id": "220e80c8-8897-4d9d-8f8f-ed9e9d47a077",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "fb0b3cbd-63d0-49e5-a0f5-b80e142d4a85",
"roles": [
"contributor"
],
"person": {
"id": "639d1c2f-5871-43e1-b0f3-76439f706f0c",
"name": "Johannes Kamps"
},
"organization": {
"id": "484da8ea-58cb-44f5-950c-b59096bd87e3",
"pref_label": {
"en": "ESRF,CS 40220,38043 GRENOBLE Cedex 9,FRANCE,38043,GRENOBLE,FRANCE"
}
}
},
{
"id": "de9429f7-8a44-4d8c-a8e2-423a2811ded6",
"roles": [
"publisher"
],
"organization": {
"id": "e252fa7c-6e74-4417-821b-b94584a563e2",
"pref_label": {
"en": "European Synchrotron Radiation Facility",
"fi": "European Synchrotron Radiation Facility",
"sv": "European Synchrotron Radiation Facility"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "The Finnish BAG encompasses 24 groups active in crystallography in Finland. The projects vary widely and include membrane proteins and protein complexes, other proteins involved in disease and antibiotics and drug development and discovery (ADP-ribosylation and several oncogenic proteins including kinases, biocatalysis, endoplasmic regulation and protein secretion) and several pathogen proteins and various enzyme targets and e.g. studies on phytochrome photoreceptors and complexes involved in actin dynamics regulation as well as membrane protein targets. Overall the BAG serves the national needs for highly variable projects, with different biological and biotechnological applications. Several project will benefit from microfocus beam lines and tunable wavelength options, others benefit from quick robust screening by MASSIF."
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2027-01-01",
"keyword": [
"x-ray probe",
"Macromolecular Crystallography",
"ID23-2",
"MX-2640"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.15151/esrf-es-1896633686",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "FInnish National Protein Crystallography Consortium"
},
"created": "2025-03-17T05:58:29Z",
"modified": "2025-03-17T05:58:29Z",
"dataset_versions": [
{
"id": "44a1f7b1-ec1a-4884-9d92-7fd3ccbb7b23",
"title": {
"en": "FInnish National Protein Crystallography Consortium"
},
"persistent_identifier": "doi:10.15151/esrf-es-1896633686",
"state": "published",
"created": "2025-03-17T05:58:29Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "879953dc-5f23-4946-a982-accb6bf14627",
"access_rights": {
"id": "3c9c2224-9c40-4cfa-be65-94389db57102",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "b4b55ed8-5a1e-4222-9b52-b43423e41cad",
"roles": [
"creator"
],
"person": {
"id": "72724426-162a-46f6-b24f-ea9c94a2e300",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "11b34a58-2324-42fd-a8ec-1d4955bbe226",
"roles": [
"publisher"
],
"organization": {
"id": "7f153b0e-fcb3-48b5-a1f6-e0d71b161861",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Datasets for I2K 2024 - Object Tracking and Track Analysis using TrackMate and CellTracksColab -workshop"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-10-22",
"keyword": [
"cell biology"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13969009",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "I2K 2024 - Object Tracking and Track Analysis using TrackMate and CellTracksColab"
},
"created": "2025-03-17T05:58:27Z",
"modified": "2025-03-17T05:58:27Z",
"dataset_versions": [
{
"id": "879953dc-5f23-4946-a982-accb6bf14627",
"title": {
"en": "I2K 2024 - Object Tracking and Track Analysis using TrackMate and CellTracksColab"
},
"persistent_identifier": "doi:10.5281/zenodo.13969009",
"state": "published",
"created": "2025-03-17T05:58:27Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "26944da3-91de-4e12-b22e-d37dce48047e",
"access_rights": {
"id": "5594a3c4-6831-4dce-9f8c-992c4f358b2e",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "c7c80cb2-f0d2-493b-994b-85552efa3864",
"roles": [
"creator"
],
"person": {
"id": "2380bd67-02fa-47ef-bdf0-b6b28d3423ce",
"name": "Luis A. Gallego-Villada",
"external_identifier": "https://orcid.org/0000-0001-6415-3178"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "d9c2c5b7-9c97-4755-a1ec-f1df82ed3229",
"roles": [
"creator"
],
"person": {
"id": "d05f0b80-efad-46b5-89d1-04e8c2a76e49",
"name": "Jennifer Cueto"
},
"organization": {
"id": "80e5df18-0980-4deb-a6d1-1985f74baa72",
"pref_label": {
"en": "IMDEA Energy Institute",
"fi": "IMDEA Energy Institute",
"sv": "IMDEA Energy Institute"
},
"external_identifier": "https://ror.org/002tzev63"
}
},
{
"id": "6220cede-ae18-4288-a8ae-5a9fd2473f55",
"roles": [
"creator"
],
"person": {
"id": "537e8ad2-99c5-46f4-9885-6b0754b76c3d",
"name": "María del Mar Alonso-Doncel"
},
"organization": {
"id": "80e5df18-0980-4deb-a6d1-1985f74baa72",
"pref_label": {
"en": "IMDEA Energy Institute",
"fi": "IMDEA Energy Institute",
"sv": "IMDEA Energy Institute"
},
"external_identifier": "https://ror.org/002tzev63"
}
},
{
"id": "80993da8-b57d-40b1-9522-1ef147584216",
"roles": [
"creator"
],
"person": {
"id": "5ef30e03-4cbc-4acc-9788-942c8b97bae3",
"name": "Päivi Mäki-Arvela"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "aaab0fe2-7778-4ad7-bbfe-a64c269743f0",
"roles": [
"creator"
],
"person": {
"id": "df7540e7-d76a-4da3-acfe-9e4a69455527",
"name": "Edwin A. Alarcón"
},
"organization": {
"id": "528d8f90-6eef-4b80-adcd-f2b0b19711da",
"pref_label": {
"en": "University of Antioquia",
"fi": "University of Antioquia",
"sv": "University of Antioquia"
},
"external_identifier": "https://ror.org/03bp5hc83"
}
},
{
"id": "03452aa0-bef9-402e-ac61-3221d5e59764",
"roles": [
"creator"
],
"person": {
"id": "67c1c622-e96c-45e5-b749-aabf1fc561a4",
"name": "David P. Serrano"
},
"organization": {
"id": "80e5df18-0980-4deb-a6d1-1985f74baa72",
"pref_label": {
"en": "IMDEA Energy Institute",
"fi": "IMDEA Energy Institute",
"sv": "IMDEA Energy Institute"
},
"external_identifier": "https://ror.org/002tzev63"
}
},
{
"id": "355eae53-ddaf-4935-b64a-6e46acc8cc22",
"roles": [
"creator"
],
"person": {
"id": "ae92cd12-28c6-42aa-9be6-b9acaf0483bd",
"name": "Dmitry Yu Murzin",
"external_identifier": "https://orcid.org/0000-0003-0788-2643"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "9ffd2f4b-0a34-4083-9897-3f3a9e05fca4",
"roles": [
"publisher"
],
"organization": {
"id": "41641ca1-80a1-486c-8a46-b133ba963f01",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Dendritic ZSM-5 zeolites were investigated in the isomerization of monoterpene epoxides, including limonene-1,2-epoxide (LE), α-pinene epoxide, and β-pinene epoxide, which yields high-value compounds used in fragrances, cosmetics, and pharmaceuticals. The fresh catalysts were thoroughly characterized using XRD, Ar physisorption, pyridine-FTIR, TEM, FTIR/DTBPyr, and 27Al MAS NMR. In comparison with conventional and hierarchical ZSM-5 materials, the dendritic zeolite with a crystallization time of 4 days (d-ZSM-5/4d) was the most active material, with a turnover frequency value of 4.4 min−1 for LE isomerization. Likewise, remarkable yields of dihydrocarvone (DHC, 63%, 70 °C, 2 h), campholenic aldehyde (72.4%, 70 °C, 5 min), and myrtanal (47.7%, 50 °C, 5 min) were obtained with this material that exhibited the largest mesopore/external surface area (360 m2 g−1), showing also the narrowest mesopore size distribution. A direct relationship was observed between the TOF values and the concentration of external Brønsted acid sites, showing the presence of strong steric/diffusional limitations that are greatly overcome with the dendritic zeolites. The lower reactivity of trans-LE compared to cis-LE was attributed to the larger steric hindrance of the oxygen atom. Exploration of the solvent influence revealed that the reaction rate of LE was favored by non-polar solvents, while highly selective DHC formation occurred in the solvents of medium polarity. The d-ZSM-5/4d sample was shown to be robust because catalytic activity could be completely recovered by air calcination."
},
"field_of_science": [
{
"id": "4fca0be9-45d1-4544-9eeb-24dec6bcb0df",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta116",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Chemical sciences",
"fi": "Kemia",
"sv": "Kemi"
}
},
{
"id": "b489ea4f-cc0c-4c00-a88f-96426f644546",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta215",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Chemical engineering",
"fi": "Teknillinen kemia, kemian prosessitekniikka",
"sv": "Teknisk kemi, kemisk processteknik"
}
}
],
"infrastructure": [],
"issued": "2024-10-14",
"keyword": [
"zeolite",
"catalysts"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13928579",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Dendritic ZSM-5 zeolites as highly active catalysts for the valorization of monoterpene epoxides"
},
"created": "2025-03-17T05:58:25Z",
"modified": "2025-03-17T05:58:25Z",
"dataset_versions": [
{
"id": "26944da3-91de-4e12-b22e-d37dce48047e",
"title": {
"en": "Dendritic ZSM-5 zeolites as highly active catalysts for the valorization of monoterpene epoxides"
},
"persistent_identifier": "doi:10.5281/zenodo.13928579",
"state": "published",
"created": "2025-03-17T05:58:25Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "85e9a88b-eb1b-411c-8fc7-fbb4b2533456",
"access_rights": {
"id": "2630eb2d-cbbe-4121-bedc-03a9c792b14c",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "bae89cae-d958-4fbc-b2c3-af893ed25375",
"roles": [
"creator"
],
"person": {
"id": "a7edc52e-fb00-441b-985b-6801503fca55",
"name": "Luis A. Gallego-Villada",
"external_identifier": "https://orcid.org/0000-0001-6415-3178"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "6dd581c6-c980-4bee-afa5-2fa240d4609f",
"roles": [
"creator"
],
"person": {
"id": "97e1e0c1-e76a-43d5-b145-152c6dfc6632",
"name": "Wander Perez Sena"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "25658b12-7616-4d94-83f4-65c89eab2146",
"roles": [
"creator"
],
"person": {
"id": "be95e49c-8b1b-4431-97f2-ee6fec64a3de",
"name": "Julián E. Sánchez-Velandia"
},
"organization": {
"id": "1f178e2b-c7be-4997-abf2-97c196e11efa",
"pref_label": {
"en": "Jaume I University",
"fi": "Jaume I University",
"sv": "Jaume I University"
},
"external_identifier": "https://ror.org/02ws1xc11"
}
},
{
"id": "2e6b58fa-0fd4-49fb-94ce-6ac04f78dc64",
"roles": [
"creator"
],
"person": {
"id": "df994ac8-5fd5-4c05-9607-c054c64d5e6e",
"name": "Jennifer Cueto"
},
"organization": {
"id": "20fb25bc-efb5-4868-8345-62dea88f8d75",
"pref_label": {
"en": "IMDEA Energy Institute",
"fi": "IMDEA Energy Institute",
"sv": "IMDEA Energy Institute"
},
"external_identifier": "https://ror.org/002tzev63"
}
},
{
"id": "46fa8a39-7904-45c7-bf60-5d9a225e2589",
"roles": [
"creator"
],
"person": {
"id": "2d8b1874-16e2-4bde-894c-7d1881e8268d",
"name": "María del Mar Alonso-Doncel"
},
"organization": {
"id": "20fb25bc-efb5-4868-8345-62dea88f8d75",
"pref_label": {
"en": "IMDEA Energy Institute",
"fi": "IMDEA Energy Institute",
"sv": "IMDEA Energy Institute"
},
"external_identifier": "https://ror.org/002tzev63"
}
},
{
"id": "9c952687-406b-4552-980f-c678449f8e7b",
"roles": [
"creator"
],
"person": {
"id": "9ba5e461-c910-4960-bd5b-a9d97cc657e4",
"name": "Johan Wärnå",
"external_identifier": "https://orcid.org/0000-0003-4071-2849"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "6f0060a9-e8a0-413f-bfce-e18c5d640970",
"roles": [
"creator"
],
"person": {
"id": "2f8c18b9-31a5-435a-8f3f-0862f7f0a45a",
"name": "Päivi Mäki-Arvela"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "affa3768-e7d0-4fe4-930e-5d77dacd2428",
"roles": [
"creator"
],
"person": {
"id": "922da013-5d6d-4e8b-b76c-2dc90964160b",
"name": "Edwin A. Alarcón"
},
"organization": {
"id": "e53954c9-55b3-4226-97da-7da8a77262b7",
"pref_label": {
"en": "University of Antioquia",
"fi": "University of Antioquia",
"sv": "University of Antioquia"
},
"external_identifier": "https://ror.org/03bp5hc83"
}
},
{
"id": "9b31888e-9417-45a4-aaaf-9315f41e6a6b",
"roles": [
"creator"
],
"person": {
"id": "402c0d83-4416-42d8-b7e4-ae86132421fe",
"name": "David P. Serrano"
},
"organization": {
"id": "20fb25bc-efb5-4868-8345-62dea88f8d75",
"pref_label": {
"en": "IMDEA Energy Institute",
"fi": "IMDEA Energy Institute",
"sv": "IMDEA Energy Institute"
},
"external_identifier": "https://ror.org/002tzev63"
}
},
{
"id": "373b37ae-d84c-4e32-8a54-2b7cef7754b7",
"roles": [
"creator"
],
"person": {
"id": "69c490b0-147d-4f3a-b895-7f76b593d277",
"name": "Dmitry Murzin",
"external_identifier": "https://orcid.org/0000-0003-0788-2643"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "9775737f-01cc-4191-ba80-cf8af17835d8",
"roles": [
"publisher"
],
"organization": {
"id": "eff17e6a-911f-4f1f-8985-f89612833c2e",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This study explores the isomerization of limonene-1,2-epoxide (LE) from kinetic and mechanistic viewpoints, using a dendritic ZSM-5 zeolite (d-ZSM-5) as a highly selective catalyst for the formation of dihydrocarvone (DHC) in the form of diastereoisomers (cis + trans). Ethyl acetate, a green solvent, was used at mild reaction temperatures (50–––70 °C). DHC, which can also be extracted from caraway oil, is widely used as an intermediate for epoxylactone production and as a constituent in flavors and perfumes. Kinetic modeling of LE isomerization was performed using a reaction network with eight parallel reactions and the corresponding rate equations, derived from the assumption of the rate-limiting surface reactions. The large standard errors in the statistical results of some kinetic parameters of the initial data fitting suggested that three of those reactions can be neglected to describe the kinetic model more accurately. This refinement resulted in standard errors in the kinetic parameters lower than ca. 11 %, confirming the statistical reliability of the modified kinetic model. Activation energies of 41.1 and 162 kJ/mol were estimated for the formation of cis-DHC and trans-DHC, respectively. Density Functional Theory (DFT) calculations revealed the preferred pathway for both cis and trans-LE conversion to DHC and carveol. The rate-determining step, carbocation formation (ΔEact = 234 kJ/mol), precedes near-instantaneous dihydrocarvone formation under the studied conditions."
},
"field_of_science": [
{
"id": "4fca0be9-45d1-4544-9eeb-24dec6bcb0df",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta116",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Chemical sciences",
"fi": "Kemia",
"sv": "Kemi"
}
},
{
"id": "b489ea4f-cc0c-4c00-a88f-96426f644546",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta215",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Chemical engineering",
"fi": "Teknillinen kemia, kemian prosessitekniikka",
"sv": "Teknisk kemi, kemisk processteknik"
}
}
],
"infrastructure": [],
"issued": "2024-10-14",
"keyword": [
"synthesis",
"zeolite"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13928907",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Synthesis of dihydrocarvone over dendritic ZSM-5 Zeolite: A comprehensive study of experimental, kinetics, and computational insights"
},
"created": "2025-03-17T05:58:22Z",
"modified": "2025-03-17T05:58:22Z",
"dataset_versions": [
{
"id": "85e9a88b-eb1b-411c-8fc7-fbb4b2533456",
"title": {
"en": "Synthesis of dihydrocarvone over dendritic ZSM-5 Zeolite: A comprehensive study of experimental, kinetics, and computational insights"
},
"persistent_identifier": "doi:10.5281/zenodo.13928907",
"state": "published",
"created": "2025-03-17T05:58:22Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "2c5d7eab-4a72-485f-9547-eb930cd56edf",
"access_rights": {
"id": "22d7991a-a777-4c6e-a2fd-33e4ebcb2532",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "fe8dfd35-95fa-4b73-8885-9611c448ad7e",
"roles": [
"creator"
],
"person": {
"id": "458e6b03-1f27-40d0-a1df-7e536c30d1b4",
"name": "Louise Forsblom",
"external_identifier": "https://orcid.org/0000-0001-6583-176X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "48c0ec92-6a34-40dd-b965-b7dc7335e9e6",
"roles": [
"creator"
],
"person": {
"id": "31d4cb8f-6be2-4b5f-b58d-ac22d269d93b",
"name": "Elina A. Virtanen"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "c2bbe10b-e3cf-4c3b-b6e3-766711cdad18",
"roles": [
"creator"
],
"person": {
"id": "e834ebb5-d62b-4911-b3f0-d7bd1a1f0dd1",
"name": "Jaakko Haapamäki"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "a013f6e6-b0d9-4d9f-b129-0d4e3db0d28b",
"roles": [
"creator"
],
"person": {
"id": "e6682e1a-01d1-400b-a37f-227b16091bde",
"name": "Joonas Hoikkala"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "6d01e11c-4d0c-433e-a200-b1c0ad86e1bb",
"roles": [
"creator"
],
"person": {
"id": "c00eeda2-b5b0-4e4d-9e29-18dace37bc08",
"name": "Niko Kallio"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "a866d0a5-3fd1-48cd-bfea-5520dd47a1a5",
"roles": [
"creator"
],
"person": {
"id": "6eee59e4-b40d-48aa-9391-2530920f927f",
"name": "Ville-Juhani Karvinen"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "1b1fc1a1-5c82-43b3-8d08-9604a8af9990",
"roles": [
"creator"
],
"person": {
"id": "c7d3709f-fc2e-4c59-ab39-f0cbb188fda8",
"name": "Anu Kaskela"
},
"organization": {
"id": "73c77ad4-bbf6-4067-b18f-ad8b099102eb",
"pref_label": {
"en": "Geological Survey of Finland"
}
}
},
{
"id": "9ed15bd9-e9ca-4608-b477-8918052cc530",
"roles": [
"creator"
],
"person": {
"id": "41def71e-e377-45e6-8098-9a572690261f",
"name": "Essi Keskinen"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "f0454275-83a4-4a46-85a8-4d1e53303c74",
"roles": [
"creator"
],
"person": {
"id": "2a6c3a92-a695-4b72-af3e-83d7d32be1ca",
"name": "Lauri Kuismanen"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "064b9014-2239-4d82-87f1-d80839375e93",
"roles": [
"creator"
],
"person": {
"id": "bf4d91da-c6f4-4f48-a8e5-1bac1217bc46",
"name": "Lasse Kurvinen"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "80591b0b-dab6-4a10-b1f4-a3d109201540",
"roles": [
"creator"
],
"person": {
"id": "01191868-86b8-491f-9642-3da3ab73b123",
"name": "Ari O. Laine"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "fa0305aa-da1b-4d95-a6b1-befbefab9da9",
"roles": [
"creator"
],
"person": {
"id": "38e0c1e5-06d3-45b4-a6f4-d1961f41dd06",
"name": "Maiju Lanki"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "af899613-54d9-439e-844a-b0b7ccadd9e5",
"roles": [
"creator"
],
"person": {
"id": "62749892-1617-4c14-9d6d-a27b69d3fc78",
"name": "Eveliina Lampinen"
},
"organization": {
"id": "dc61315c-e3d3-41b0-a69c-2837db19c5ae",
"pref_label": {
"en": "North Ostrobothnia Centre for Economic Development"
}
}
},
{
"id": "2e06db0a-4398-4d7c-9eb5-e210cd66fc5e",
"roles": [
"creator"
],
"person": {
"id": "07c1a5ef-b7b3-4741-bda6-1c4521e0e9fa",
"name": "Pekka Lehtonen"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "e4694bd9-e72b-4ed1-b830-087d11187d78",
"roles": [
"creator"
],
"person": {
"id": "ed57af67-30ec-42f2-a9a7-65e1dce8c284",
"name": "Aija Nieminen"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "f3441e55-3885-4605-b3b9-e73adcb51250",
"roles": [
"creator"
],
"person": {
"id": "cf0c0b56-f1db-45f3-9817-2da04e2a9fec",
"name": "Kevin O'Brien"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "83d0b2f3-a596-408a-8bd8-eeda4819acc2",
"roles": [
"creator"
],
"person": {
"id": "4047d5b0-0609-46f3-aa9b-881ee0056cae",
"name": "Anu Riihimäki"
},
"organization": {
"id": "bc71835a-2860-45a9-959f-6a58884c495e",
"pref_label": {
"en": "Parks & WIldlife Finland"
}
}
},
{
"id": "c1a81c36-69e8-4714-a6ab-16ec927b7783",
"roles": [
"creator"
],
"person": {
"id": "7fe717c9-934c-42e1-ab05-8b56d191e666",
"name": "Henna Rinne"
},
"organization": {
"id": "ca893c32-0541-4ace-a8a2-b020955de3c8",
"pref_label": {
"en": "Åbo Akademi University"
}
}
},
{
"id": "331063a8-3851-4926-b4e2-f58c93a6ee69",
"roles": [
"creator"
],
"person": {
"id": "c8d6038b-f482-4d9e-aa7a-2c8afa74866c",
"name": "Sonja Salovius-Lauren",
"external_identifier": "https://orcid.org/0000-0002-8686-4592"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "5a5257e9-7a3b-4c74-a004-43e0192261f0",
"roles": [
"creator"
],
"person": {
"id": "7f876c64-27c1-4fb1-8549-2ac74c6fde9e",
"name": "Antti Takolander"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "071950b0-73f4-4a55-8097-efea88f712ff",
"roles": [
"creator"
],
"person": {
"id": "185097bc-1465-455a-a7c7-457d5e229bd6",
"name": "Karl Weckström"
},
"organization": {
"id": "ca893c32-0541-4ace-a8a2-b020955de3c8",
"pref_label": {
"en": "Åbo Akademi University"
}
}
},
{
"id": "41d306c4-8b69-4845-bc88-ae5455a3c2ce",
"roles": [
"creator"
],
"person": {
"id": "b2bd6cdd-cfe9-4806-a365-c3ae163922be",
"name": "Markku Viitasalo"
},
"organization": {
"id": "9e82f47b-f7d3-4ece-b9de-e6b39158755b",
"pref_label": {
"en": "Finnish Environment Institute"
}
}
},
{
"id": "1e3423a1-2403-4282-ab0f-437133112e8d",
"roles": [
"publisher"
],
"organization": {
"id": "b7abc1aa-55dc-4a86-a85f-bab9ee7ad9eb",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Dataset related to the article Finnish inventory data of underwater marine biodiversity. The data are described in detail in the article. The dataset contains underwater biodiversity observations from the Finnish marine area collected using multiple methods. We provide two datasets, one mainly containing vegetation mapping data and one focused on benthic fauna. In addition we provide a summary table and all custom code used to produce the data."
},
"field_of_science": [
{
"id": "ea57f07d-16d8-4c7a-8a52-39ef1112278a",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1181",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Ecology, evolutionary biology",
"fi": "Ekologia, evoluutiobiologia",
"sv": "Ekologi, evolutionsbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-09-21",
"keyword": [
"Marine Biodiversity"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13822191",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Finnish inventory data of underwater marine biodiversity"
},
"created": "2025-03-17T05:58:20Z",
"modified": "2025-03-17T05:58:20Z",
"dataset_versions": [
{
"id": "2c5d7eab-4a72-485f-9547-eb930cd56edf",
"title": {
"en": "Finnish inventory data of underwater marine biodiversity"
},
"persistent_identifier": "doi:10.5281/zenodo.13822191",
"state": "published",
"created": "2025-03-17T05:58:20Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "292312ba-d44d-47d9-9844-856b6e8f0468",
"access_rights": {
"id": "67ad50f9-2ba1-4f41-8e39-2ad3adce5b87",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "8d85cab9-85a0-499e-b08e-ce3649ef7721",
"roles": [
"creator"
],
"person": {
"id": "51db5dc7-5d9a-47d3-a39f-4ae874a43ad9",
"name": "Gautier Follain"
},
"organization": {
"id": "78603e4c-068e-46d5-8ea7-29d59f8c6139",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "c054143c-ba76-4564-9deb-21a4de4698fc",
"roles": [
"creator"
],
"person": {
"id": "80e10637-a65a-47f2-aed2-000ded027c9a",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "bc43cc6f-3950-42c5-9943-9351598da74e",
"roles": [
"creator"
],
"person": {
"id": "8913c1f3-d119-405e-a938-cc326011d887",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "5c8916ab-c9aa-4d65-bb7e-499e0e4a2fb4",
"roles": [
"creator"
],
"person": {
"id": "8e544a59-dc6a-4c61-b64b-0e03d6178a10",
"name": "Johanna Ivaska"
},
"organization": {
"id": "78603e4c-068e-46d5-8ea7-29d59f8c6139",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "2cda8d3c-2562-4804-b005-572efceacf93",
"roles": [
"creator"
],
"person": {
"id": "bbad3bfc-9cc4-4574-bb75-e75289e2743d",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "fdf69035-de34-4b81-97d2-659ae2aecd45",
"roles": [
"publisher"
],
"organization": {
"id": "82f8e33b-2120-4bc0-add2-2d5158fe5e14",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository contains raw data files, statistical summaries, original and edited images and videos used for the manuscript: Fast label-free live imaging reveals regulation of cancer cell endothelium adhesion by flow and CD44-HA interaction doi: Gautier Follain1,2, Sujan Ghimire2*, Joanna W Pylvänäinen2,3*, Monika Vaitkevičiūtė1,2,3, Diana Wurzinger2, Camilo Guzmán4, James RW Conway5, Michal Dibus1, Sanna Oikari6, Kirsi Rilla6, Marko Salmi3,7,8, Johanna Ivaska1,3,9-11#, Guillaume Jacquemet1,2,3,12#. Turku Bioscience Centre, University of Turku and Åbo Akademi University, FI-20520 Turku, FI Faculty of Science and Engineering, Cell Biology, Åbo Akademi University, FI-20520 Turku, FI InFLAMES Research Flagship Center, University of Turku and Åbo Akademi University, 20520 Turku, FI. Euro-BioImaging ERIC, Turku, FI Department of Biochemistry and Developmental Biology, Faculty of Medicine, University of Helsinki, Helsinki, FI. Institute of Biomedicine, University of Eastern Finland, 70211 Kuopio, FI Institute of Biomedicine, University of Turku, Turku, FI MediCity Research Laboratory, University of Turku, Turku, FI Department of Life Technologies, University of Turku, 20520 Turku, FI. Western Finnish Cancer Center (FICAN West), University of Turku, 20520 Turku, FI. Foundation for the Finnish Cancer Institute, Tukholmankatu 8, 00014 Helsinki, FI Turku Bioimaging, University of Turku and Åbo Akademi University, FI- 20520 Turku, FI"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-09-27",
"keyword": [
"Biochemistry, cell and molecular biology"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13846276",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Fast label-free live imaging reveals regulation of cancer cell endothelium adhesion by flow and CD44-HA interaction"
},
"created": "2025-03-17T05:58:17Z",
"modified": "2025-03-17T05:58:17Z",
"dataset_versions": [
{
"id": "292312ba-d44d-47d9-9844-856b6e8f0468",
"title": {
"en": "Fast label-free live imaging reveals regulation of cancer cell endothelium adhesion by flow and CD44-HA interaction"
},
"persistent_identifier": "doi:10.5281/zenodo.13846276",
"state": "published",
"created": "2025-03-17T05:58:17Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "dde4a1dc-c20d-4d97-80e2-725d53e35ee6",
"access_rights": {
"id": "5f0bb3ca-4177-4f41-8af4-f9cc0e26956d",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "9bb18fd1-7ccf-4bfe-8e6a-5123f351e514",
"roles": [
"creator"
],
"person": {
"id": "69ea6d96-7fff-43c8-8bad-9b7ce0a65bde",
"name": "Jarkko Peltomäki"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "7695b3d9-5f7c-43e7-b35f-3ce40306f666",
"roles": [
"creator"
],
"person": {
"id": "0bd8235a-add1-487e-9d08-4565bd55217f",
"name": "Ivan Porres",
"external_identifier": "https://orcid.org/0000-0002-6791-2018"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "22037512-cdd4-4ee5-83e9-c1c38234648c",
"roles": [
"publisher"
],
"organization": {
"id": "d55c8437-ae64-446e-9994-51abd2a5d9c3",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "A CSV file that contains all data necessary to rebuild the figures and tables of the paper \"Learning test generators for cyber-physical systems\"."
},
"field_of_science": [
{
"id": "33d291b9-9b23-4192-b878-cffc210af1d3",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta113",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Computer and information sciences",
"fi": "Tietojenkäsittely ja informaatiotieteet",
"sv": "Data- och informationsvetenskap"
}
}
],
"infrastructure": [],
"issued": "2024-09-30",
"keyword": [
"cyber-physical systems",
"testing"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13860526",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "WOGAN Experimental Results"
},
"created": "2025-03-17T05:58:15Z",
"modified": "2025-03-17T05:58:15Z",
"dataset_versions": [
{
"id": "dde4a1dc-c20d-4d97-80e2-725d53e35ee6",
"title": {
"en": "WOGAN Experimental Results"
},
"persistent_identifier": "doi:10.5281/zenodo.13860526",
"state": "published",
"created": "2025-03-17T05:58:15Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "836db464-4fdd-40ae-ab72-fca88f609ac3",
"access_rights": {
"id": "db33cd66-ba2a-4202-b265-460c1383bd49",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "dacc3a41-126d-435c-96e5-d226ac7598e8",
"roles": [
"creator"
],
"person": {
"id": "6d966933-be4a-4eb7-941d-29444c192f56",
"name": "Patrik Söderberg"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "202ec0bb-3d49-4a4c-9269-2653147aae92",
"roles": [
"contributor"
],
"person": {
"id": "63ce4b0b-77c8-4649-ae58-e9e8d039ea44",
"name": "Martina Mölsä",
"external_identifier": "https://orcid.org/0000-0001-8936-1168"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "000e3d4f-83bb-4ab8-be4f-ebe72f7048ba",
"roles": [
"publisher"
],
"organization": {
"id": "b16bd874-dc26-43ca-bdfa-1d680898d8b3",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This data note presents a dataset collected within a 10-day experience sampling survey study among middle and upper secondary students in Finland during autumn 2022. The dataset encompasses a brief start-up survey in addition to 40 momentary assessments, allowing for the analysis of both inter- and intraindividual processes."
},
"field_of_science": [
{
"id": "d6d3fdd1-109b-4be3-8d50-782bc474d514",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta516",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Educational sciences",
"fi": "Kasvatustieteet",
"sv": "Pedagogik"
}
}
],
"infrastructure": [],
"issued": "2024-09-25",
"keyword": [
"students",
"middle and upper secondary education"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13332148",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "A 10-day experience sampling dataset on subjective experiences of middle and upper secondary school students in 2022"
},
"created": "2025-03-17T05:58:13Z",
"modified": "2025-03-17T05:58:13Z",
"dataset_versions": [
{
"id": "836db464-4fdd-40ae-ab72-fca88f609ac3",
"title": {
"en": "A 10-day experience sampling dataset on subjective experiences of middle and upper secondary school students in 2022"
},
"persistent_identifier": "doi:10.5281/zenodo.13332148",
"state": "published",
"created": "2025-03-17T05:58:13Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "67382dcc-245d-41cd-bd1b-056b24e735b4",
"access_rights": {
"id": "c536dbe7-d0cb-49da-bd2f-7323b5825fe5",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "d1e64e46-728b-4a35-ad01-eee14c525ae2",
"roles": [
"creator"
],
"person": {
"id": "12032d0a-a231-4137-a048-23f79b883a46",
"name": "Afonso Mendes"
},
"organization": {
"id": "ff10335c-ad07-4e22-ac4f-c10fbb3ff11b",
"pref_label": {
"en": "Instituto Gulbenkian de Ciência",
"fi": "Instituto Gulbenkian de Ciência",
"sv": "Instituto Gulbenkian de Ciência"
},
"external_identifier": "https://ror.org/04b08hq31"
}
},
{
"id": "97e07fc5-86f8-44d4-9984-93137512f516",
"roles": [
"creator"
],
"person": {
"id": "921c8b48-1a07-47a4-bd72-24d35cbfdb93",
"name": "Bruno Saraiva"
},
"organization": {
"id": "ff10335c-ad07-4e22-ac4f-c10fbb3ff11b",
"pref_label": {
"en": "Instituto Gulbenkian de Ciência",
"fi": "Instituto Gulbenkian de Ciência",
"sv": "Instituto Gulbenkian de Ciência"
},
"external_identifier": "https://ror.org/04b08hq31"
}
},
{
"id": "6e45827d-ad49-4b99-9c56-04dc07af6966",
"roles": [
"creator"
],
"person": {
"id": "d87a1f0c-1999-43a6-97a8-2ad53812105e",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "9c7df4ba-2cf3-494e-a7c4-54acc550f318",
"roles": [
"creator"
],
"person": {
"id": "ace3f5e2-3423-4a6a-a893-3e084e2a6b3c",
"name": "João I. Mamede"
},
"organization": {
"id": "38726458-5d29-44e0-b6fa-8f8e39d69f29",
"pref_label": {
"en": "Rush University Medical Center",
"fi": "Rush University Medical Center",
"sv": "Rush University Medical Center"
},
"external_identifier": "https://ror.org/01j7c0b24"
}
},
{
"id": "90a2387c-fc93-4721-a48a-bbfde4db3b57",
"roles": [
"creator"
],
"person": {
"id": "4f7001f2-c07f-4c8b-9106-fa6eb1b35517",
"name": "Christophe Leterrier"
},
"organization": {
"id": "143fb348-fe26-4247-afe6-b5592823775f",
"pref_label": {
"en": "Aix Marseille Université, CNRS, INP UMR7051, NeuroCyto, Marseille, France"
}
}
},
{
"id": "ea5f5ed8-185e-4789-ab70-2baece4b5e81",
"roles": [
"creator"
],
"person": {
"id": "f5046684-8171-4aae-830f-73f51a05aff5",
"name": "Ricardo Henriques"
},
"organization": {
"id": "ff10335c-ad07-4e22-ac4f-c10fbb3ff11b",
"pref_label": {
"en": "Instituto Gulbenkian de Ciência",
"fi": "Instituto Gulbenkian de Ciência",
"sv": "Instituto Gulbenkian de Ciência"
},
"external_identifier": "https://ror.org/04b08hq31"
}
},
{
"id": "6e20ac16-fc3f-4a82-a49f-c4a0d413e5da",
"roles": [
"publisher"
],
"organization": {
"id": "181b5ab2-3d03-4742-a7bf-560caaeb34de",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "tubulin_block_repetition.zip Data used in Fig. 1a and Fig. S2 Folder \"tubulin_line_blocks\" contains the input image - a STORM image reconstruction of a HeLa cell with labeled microtubules (from Jimenez et al. (2020). About samples, giving examples: optimized single molecule localization microscopy. Methods. 174:100-114.). A Gaussian blur (2 px) was applied and the image was scaled to 0.25x the original size. The full field-of-view and the crop used in the manuscript are provided. The folder also contain files \"blocks_lines.tif\" and \"block_crossings.tif\", which are image stacks containing the simulated blocks used in the analysis. The folder \"line_sliding_test\" contains the input (full size and a crop) and the simulated reference block used in Fig. S2c (i.e., specificity test). jurkat_gag-egfp_hilo.tif Data used in Fig. 1c and Fig. S4. A Jurkat cell expressing an TetOn-Optigag-(i)EGFP. The cell was cultured in an activation surface containing anti-CD3 antibody and 1 µM of doxycycline. Imaging was done in a Nanoimager (ONI) using the 488 nm laser at 10% and channel 0 (two-band dichroic: 498-551 nm and 576-620 nm). The HILO angle was optimised manually and images were acquired at 100 ms exposure. rpe_eb3.tif Data used in Fig. 4, Fig. S1 and Fig. S13. An RPE1 cell stably expressing EB3-GFP Seeded into a Lab-Tek 8-well chamber (Thermo Fisher) and allowed to adhere for 24 hours. Data acquired in a Nanoimager (ONI), using the 488 nm laser at 10% and channel 0 (two-band dichroic: 498-551 nm and 576-620 nm); 75 ms exposure, one frame every 3 seconds. jurkat_gag-EGFP_epi.tif Data used in Fig. 3 and Fig. S12. A Jurkat cell expressing an TetOn-Optigag-(i)EGFP. Imaging was performed on an inverted microscope ECLIPSE Ti2-E (Nikon Instruments) equipped with a Fusion BT (Hamamatsu Photonics K.K., C14440-20UP) and a Plan Apo λ 100x (NA 1.45) Oil objective. The sample was illuminated with LED light at 515 nm (CoolLED pe800) and acquisition was done at 75 ms exposure with an active Nikon Perfect Focus system and the NIS-Elements AR 5.30.05 software (Nikon Instruments). Volumes were captured by acquiring frames at different depths (z-step size: 0.5 µm). Image deconvolution was performed using a custom Python script based on the Richardson-Lucy method."
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-09-15",
"keyword": [
"quantitative image analysis"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13764726",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "SReD - Figure's data"
},
"created": "2025-03-17T05:58:11Z",
"modified": "2025-03-17T05:58:11Z",
"dataset_versions": [
{
"id": "67382dcc-245d-41cd-bd1b-056b24e735b4",
"title": {
"en": "SReD - Figure's data"
},
"persistent_identifier": "doi:10.5281/zenodo.13764726",
"state": "published",
"created": "2025-03-17T05:58:11Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "d31d6528-485c-45f9-a5cd-0d8576198dcf",
"access_rights": {
"id": "4882355f-7397-40be-b62a-7034e990b892",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "59f9feee-7ffe-4795-9eaf-145f60b9fb68",
"roles": [
"creator"
],
"person": {
"id": "1226ab74-6af1-4e38-96f9-589cc5b14d7c",
"name": "Gautier Follain"
},
"organization": {
"id": "983c409c-4185-42a6-bd0f-b8711a35c06b",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "0c22d608-cb25-478b-bf20-cd6e86aa0fa8",
"roles": [
"creator"
],
"person": {
"id": "0ffe15dc-94f7-4f88-9338-0330d6b45e4e",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "9c161bf5-2ff7-4e90-9948-18b3a80d0fd0",
"roles": [
"creator"
],
"person": {
"id": "23e0d84a-c199-4cd1-9947-ed5ef6844084",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "42a3c997-e68a-4ac3-a18b-9ba8808179af",
"roles": [
"creator"
],
"person": {
"id": "5ad702cf-d1ab-4495-8907-19614c44d79e",
"name": "Johanna Ivaska"
},
"organization": {
"id": "983c409c-4185-42a6-bd0f-b8711a35c06b",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "7f3e7e7d-9de1-4f53-9043-8566466d788b",
"roles": [
"creator"
],
"person": {
"id": "c1f69c92-87a5-4561-9348-fee0ff206f02",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "29165f21-c6be-4a09-9035-e5af9f09ff16",
"roles": [
"publisher"
],
"organization": {
"id": "87f20894-2a7d-4671-a9b4-c5e0cb1f6f75",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This dataset contains tracking results of CD44 siRNA-silenced AsPC1, and MiaPaca cells perfused on endothelial monolayers under physiological flow speeds. Videos were recorded using a Nikon Eclipse Ti2-E microscope and 20x objective. Perfused cells from the generated videos were segmented using custom-trained Stardist models. Tracking was performed using TrackMate. Tracking results were analyzed using a custom CellTracksColab notebook. The dataset here contains the CSV files generated by TrackMate (Track and Spots information), the tracking data stored in the CellTracksColab format (Analysis.zip), and the analysis output used in the paper (Analysis.zip). Specifications Sample information AsPC1 and MiaPaca cells perfused on HUVEC cells under physiological flow speeds: 400 µm/s (p1), 200 µm/s (p2), 100 µm/s (p3) and 400 µm/s (p4). CD44 siRNA silencing of PDACs prior to perfusion Imaging specs Microscope: Nikon Eclipse Ti2-E, 20x objective Data Type: Brightfield microscopy images (16-bit) Image Size: 1024 x 1022 pixels (Pixel size: 650 nm) Recording speed 25 frames/s DL models: Cancer cells: https://doi.org/10.5281/zenodo.10572122 Neutrophils: https://doi.org/10.5281/zenodo.10572231 Mononucleated cells: https://doi.org/10.5281/zenodo.10572200 Model Training and predictions: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki) Tracking parameters (TrackMate): Detection: label detector Tracking: Simple LAP detector: Linking max distance: 20 px; Gap-closing max distance: 20 px; Gap-closing max frame gap: 4. Track filtering: min number of spots in the tracks 11.79 Tracking analysis Tracks were analyzed using a customized CellTracksColab notebook (https://github.com/CellMigrationLab/PDAC_DL/tree/main/CellTracksColab) Contents of the repository Analysis.zip As_TCsi1.zip dataset As_TCsi2.zip dataset As_TCsi3.zip dataset As_TCsiCtrl.zip dataset Mia_TCsi1.zip dataset Mia_TCsi2.zip dataset Mia_TCsi3.zip dataset Mia_TCsiCtrl.zip dataset Reference Biorxiv paper"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-27",
"keyword": [
"cell biology",
"endothelial monolayers"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13379627",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "PDAC cells CD44 siRNA perfusion tracking dataset"
},
"created": "2025-03-17T05:58:09Z",
"modified": "2025-03-17T05:58:09Z",
"dataset_versions": [
{
"id": "d31d6528-485c-45f9-a5cd-0d8576198dcf",
"title": {
"en": "PDAC cells CD44 siRNA perfusion tracking dataset"
},
"persistent_identifier": "doi:10.5281/zenodo.13379627",
"state": "published",
"created": "2025-03-17T05:58:09Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "64b86c96-f683-4107-8b55-f2c9d60c635e",
"access_rights": {
"id": "b4107f60-da83-4e79-97b0-9e151bbc2d51",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "ddbf3455-2fc5-4ae8-a40d-3404740a7668",
"roles": [
"creator"
],
"person": {
"id": "f4361c6f-518d-4a4c-8a36-0af5ca6f5f49",
"name": "Gautier Follain"
},
"organization": {
"id": "fcf4266f-569b-45df-9ca8-ae73d54d6f7b",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "1274eb5c-9b51-442f-802c-e4251edb873a",
"roles": [
"creator"
],
"person": {
"id": "206d536b-caaf-4804-99ff-07815850d387",
"name": "Sujan Ghimire"
},
"organization": {
"id": "2c299202-68aa-4f58-a3c1-5dd52166162a",
"pref_label": {
"en": "Åbo Akademi University"
}
}
},
{
"id": "1093c51e-4f07-4a65-a75d-4c34170b7a69",
"roles": [
"creator"
],
"person": {
"id": "7a71ae6b-dec6-43e3-9c57-12fd0daa79e8",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "e36280e3-3d13-4bcb-a0f5-4f27abfad325",
"roles": [
"creator"
],
"person": {
"id": "a6d63b2a-99ae-4788-928a-bd63a9212f8e",
"name": "Johanna Ivaska"
},
"organization": {
"id": "fcf4266f-569b-45df-9ca8-ae73d54d6f7b",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "7edf955b-a057-4fe3-9731-7fc362c1a865",
"roles": [
"creator"
],
"person": {
"id": "5bccf48e-53ce-4ff6-a970-f79297ef8de3",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "b351242b-d768-494f-9ec0-c7424c535c8f",
"roles": [
"publisher"
],
"organization": {
"id": "03f2897f-53d6-4e54-82b0-5413516d94cb",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This dataset contains tracking results of AsPC1 and MiaPaca cells perfused on CD44 siRNA-silenced endothelial monolayers under physiological flow speeds. Videos were recorded using a Nikon Eclipse Ti2-E microscope and 20x objective. Perfused cells from the generated videos were segmented using custom-trained Stardist models. Tracking was performed using TrackMate, and tracking results were analyzed using a custom CellTracksColab notebook. The dataset here contains the CSV files generated by TrackMate (Track and Spots information), the tracking data stored in the CellTracksColab format (Analysis.zip), and the analysis output used in the paper (Analysis.zip). Specifications Sample information AsPC1 and MiaPaca cells perfused on HUVEC cells under physiological flow speeds: 400 µm/s (p1), 200 µm/s (p2), 100 µm/s (p3) and 400 µm/s (p4). CD44 siRNA silencing of the HUVEC monolayer Imaging specs Microscope: Nikon Eclipse Ti2-E, 20x objective Data Type: Brightfield microscopy images (16-bit) Image Size: 1024 x 1022 pixels (Pixel size: 650 nm) Recording speed 25 frames/s DL models: Cancer cells: https://doi.org/10.5281/zenodo.10572122 Neutrophils: https://doi.org/10.5281/zenodo.10572231 Mononucleated cells: https://doi.org/10.5281/zenodo.10572200 Model Training and predictions: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki) Tracking parameters (TrackMate): Detection: label detector Tracking: Simple LAP detector: Linking max distance: 20 px; Gap-closing max distance: 20 px; Gap-closing max frame gap: 4. Track filtering: min number of spots in the tracks 11.79 Tracking analysis Tracks were analyzed using a customized CellTracksColab notebook (https://github.com/CellMigrationLab/PDAC_DL/tree/main/CellTracksColab) Contents of the repository Analysis.zip As_HUsi1.zip dataset As_HUsi2.zip dataset As_HUsi3.zip dataset As_HUsiCtrl.zip dataset Mia_HUsi1.zip dataset Mia_HUsi2.zip dataset Mia_HUsi3.zip dataset Mia_HUsiCtrl.zip dataset Reference Biorxiv paper"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-27",
"keyword": [
"cells",
"endothelial monolayers"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13377961",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "HUVEC CD44 siRNA perfusion tracking dataset"
},
"created": "2025-03-17T05:58:07Z",
"modified": "2025-03-17T05:58:07Z",
"dataset_versions": [
{
"id": "64b86c96-f683-4107-8b55-f2c9d60c635e",
"title": {
"en": "HUVEC CD44 siRNA perfusion tracking dataset"
},
"persistent_identifier": "doi:10.5281/zenodo.13377961",
"state": "published",
"created": "2025-03-17T05:58:07Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "407840ea-d92e-4b93-b8b1-b582412c1b84",
"access_rights": {
"id": "a62f7677-7f21-46de-af6d-8fe9380c394e",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "c9b8af72-aa93-4e87-b40b-08ef065500d1",
"roles": [
"creator"
],
"person": {
"id": "bb61a69a-dfe8-464c-bdbf-ffe8f24ed523",
"name": "Gautier Follain"
},
"organization": {
"id": "44a0e4bb-a9c8-44bc-abbf-98d22750f865",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "b53a2055-2f32-4a29-8beb-b1b6dcd72bcf",
"roles": [
"creator"
],
"person": {
"id": "7db535cd-33ac-43d9-803e-aa73645fdcd7",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "225673d1-3f48-4071-994c-3ad2af009430",
"roles": [
"creator"
],
"person": {
"id": "777e43a8-e036-46d7-ae41-6a158a42e360",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "3f579627-d4ab-46c2-a8a4-dbe0d0c47560",
"roles": [
"creator"
],
"person": {
"id": "c716177b-b542-4d03-9fba-bdc3f9662edf",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "53b262e6-4197-4399-a0d0-831ecaa21b2b",
"roles": [
"creator"
],
"person": {
"id": "54868ed1-2ddf-431d-bcc5-c36bed7afe55",
"name": "Johanna Ivaska"
},
"organization": {
"id": "44a0e4bb-a9c8-44bc-abbf-98d22750f865",
"pref_label": {
"en": "University of Turku"
}
}
},
{
"id": "58c3f5e6-e2d8-47d4-a64c-e4efbc80abb3",
"roles": [
"publisher"
],
"organization": {
"id": "55269c43-d011-4c49-89f5-509cd9997e1c",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This dataset contains tracking results of different combinations of CD44 antibody-blocked AsPC1 and MiaPaca cells perfused on CD44 antibody-blocked endothelial monolayers under physiological flow speeds. Videos were recorded using a Nikon Eclipse Ti2-E microscope and 20x objective. Perfused cells from the generated videos were segmented using custom-trained Stardist models. Tracking was performed using TrackMate, and tracking results were analyzed using a custom CellTracksColab notebook. The dataset here contains the CSV files generated by TrackMate (Track and Spots information), the tracking data stored in the CellTracksColab format (Analysis.zip), and the analysis output used in the paper (Analysis.zip). Sample information AsPC1 and MiaPaca cells perfused on HUVEC cells under physiological flow speeds: 400 µm/s (p1), 200 µm/s (p2), 100 µm/s (p3) and 400 µm/s (p4). CD44 antibody blocking of PDACs, HUVECs, or both prior to perfusion Imaging specs Microscope: Nikon Eclipse Ti2-E, 20x objective Data Type: Brightfield microscopy images (16-bit) Image Size: 1024 x 1022 pixels (Pixel size: 650 nm) Recording speed 25 frames/s DL models: Cancer cells: https://doi.org/10.5281/zenodo.10572122 Neutrophils: https://doi.org/10.5281/zenodo.10572231 Mononucleated cells: https://doi.org/10.5281/zenodo.10572200 Model Training and predictions: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki) Tracking parameters (TrackMate): Detection: label detector Tracking: Simple LAP detector: Linking max distance: 20 px; Gap-closing max distance: 20 px; Gap-closing max frame gap: 4. Track filtering: min number of spots in the tracks 11.79 Tracking analysis Tracks were analyzed using a customized CellTracksColab notebook (https://github.com/CellMigrationLab/PDAC_DL/tree/main/CellTracksColab) Contents of the repository Analysis_AsPC1.zip dataset Analysis_Miapaca.zip dataset As_blockboth.zip dataset As_ctrlblock.zip dataset As_HUblock.zip dataset As_TCblock.zip dataset Mia_blockboth.zip Mia_ctrlblock.zip Mia_HUblock.zip Mia_TCblock.zip Reference Biorxiv paper"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-30",
"keyword": [
"cells",
"antibody-blocked endothelial monolayers",
"Biochemistry and Cell Biology"
],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13584215",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "CD44 Blocking Antibody perfusion tracking dataset"
},
"created": "2025-03-17T05:58:05Z",
"modified": "2025-03-17T05:58:05Z",
"dataset_versions": [
{
"id": "407840ea-d92e-4b93-b8b1-b582412c1b84",
"title": {
"en": "CD44 Blocking Antibody perfusion tracking dataset"
},
"persistent_identifier": "doi:10.5281/zenodo.13584215",
"state": "published",
"created": "2025-03-17T05:58:05Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
}
]
}