HTTP 200 OK
Allow: GET, POST, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 7869,
"next": "https://metax.fairdata.fi/v3/datasets?format=api&limit=20&offset=1540",
"previous": "https://metax.fairdata.fi/v3/datasets?format=api&limit=20&offset=1500",
"results": [
{
"id": "5050443b-8d93-46a7-a6e8-09c0d1a66cd6",
"access_rights": {
"id": "7f8e793c-91db-40fe-b05e-c6aa724224f5",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "6857a088-9029-4405-abaa-ef671f2421e2",
"roles": [
"creator"
],
"person": {
"id": "2e442d87-0461-4d51-94d6-ba7b5b6b9c57",
"name": "Eero Asmala"
},
"organization": {
"id": "2f13dd6b-2bdf-45c9-9c11-e79f6cee5f4f",
"pref_label": {
"en": "Geological Survey of Finland",
"fi": "Geological Survey of Finland",
"sv": "Geological Survey of Finland"
},
"external_identifier": "https://ror.org/03vjnqy43"
}
},
{
"id": "cf20ae3e-1e48-4750-bcf9-4b44faf6fbc9",
"roles": [
"creator"
],
"person": {
"id": "c0fbc394-a38e-4c25-b0d5-6e18d8da6f68",
"name": "Peter Österholm"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "0b10558d-1c80-491c-bc9d-db6b4ce104b3",
"roles": [
"creator"
],
"person": {
"id": "d945528b-4fb1-43be-b709-8d7f056a210b",
"name": "Joonas J Virtasalo"
},
"organization": {
"id": "2f13dd6b-2bdf-45c9-9c11-e79f6cee5f4f",
"pref_label": {
"en": "Geological Survey of Finland",
"fi": "Geological Survey of Finland",
"sv": "Geological Survey of Finland"
},
"external_identifier": "https://ror.org/03vjnqy43"
}
},
{
"id": "4e89a488-072e-455e-b9a3-48017724f545",
"roles": [
"publisher"
],
"organization": {
"id": "bbda748d-d5da-466e-a5e6-cf17aecda06b",
"pref_label": {
"en": "PANGAEA",
"fi": "PANGAEA",
"sv": "PANGAEA"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Water samples were collected from the Laihianjoki and Sulvanjoki rivers in April 2021, using a bucket and transferred to 30 L acid-washed containers. The sampling was conducted during springtime, a few weeks after the peak flow caused by snow smelt. The collected river waters were immediately analyzed for pH, temperature, electrical conductivity, and salinity using a WTW Multiline P4 meter. The samples were then transported to the Tvärminne field station of the University of Helsinki, where laboratory experiments began within 24 hours.A large-volume bucket experiment was conducted to study the dynamics of suspended particle size distribution and associated nutrients during the transition from fresh to brackish water conditions. Artificial seawater with salinity of 66.8 g kg-1 was added to river water in an acid-washed basin, while changes in water chemistry and particle size distribution were continuously monitored using a multiparameter water quality sonde and a laser-diffraction particle size analyzer. Additionally, small-volume jar experiments were performed to collect particle samples under controlled conditions using a flocculator apparatus. The collected material was analyzed, and the filtrate was used for further analysis of colored dissolved organic matter.Triplicate samples from flocculator experiments were acidified and analyzed for metal concentrations using an inductively coupled plasma optical emission spectrometer (ICP-OES) and an inductively coupled plasma mass spectrometer (ICP-MS). Filtrate samples were measured for colored dissolved organic matter (CDOM) absorbance and fluorescence using a spectrophotometer and a spectrofluorometer, respectively. Particulate organic carbon (POC) and particulate organic-bound metals were analyzed in filter retentate samples using a mass spectrometer and ICP-MS. Total suspended matter (TSM) was determined by filtering and weighing samples. The apparent particle density was calculated by dividing TSM by volumetric concentrations measured by a laser-diffraction particle size analyzer. However, the density results are biased as particles larger than the detection limit of the instrument are not included in the analysis."
},
"field_of_science": [
{
"id": "7334f2e9-1aae-4b87-9088-8226211b06c9",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1171",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Geosciences",
"fi": "Geotieteet",
"sv": "Geovetenskaper"
}
}
],
"infrastructure": [],
"issued": "2023-11-09",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.1594/pangaea.961684",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Water quality and geochemical data from Laihianjoki and Sulvanjoki flocculation experiments in April 2021"
},
"created": "2025-11-14T07:37:11Z",
"modified": "2025-11-14T07:37:11Z",
"dataset_versions": [
{
"id": "5050443b-8d93-46a7-a6e8-09c0d1a66cd6",
"title": {
"en": "Water quality and geochemical data from Laihianjoki and Sulvanjoki flocculation experiments in April 2021"
},
"persistent_identifier": "doi:10.1594/pangaea.961684",
"state": "published",
"created": "2025-11-14T07:37:11Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "6ca826cc-a9fa-4526-9a59-bcf525ae1816",
"access_rights": {
"id": "207ced90-a5b9-4686-ae38-7b17f965387c",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "369306eb-a4ce-4e30-827d-c23b3f469304",
"roles": [
"creator"
],
"person": {
"id": "f01406fb-bd5e-4909-8e26-19d39ea2fb2e",
"name": "Gautier Follain"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "299ee832-4dd5-4cc4-aed4-2b24c6c55e27",
"roles": [
"creator"
],
"person": {
"id": "83cc34a7-247d-4221-af58-d09c328be848",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c50770e4-d37c-4de6-bd13-6efdfb1b60ac",
"roles": [
"creator"
],
"person": {
"id": "4d39691b-b645-40d7-b9be-90196567e79a",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "7eb96e58-8abd-4622-b1d9-fff056dc7073",
"roles": [
"creator"
],
"person": {
"id": "14f44abb-c534-4d50-9f75-d3cfe2ba7ff9",
"name": "Johanna Ivaska"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "5eca3284-14cd-4848-8eec-a8cd14ba1ad3",
"roles": [
"creator"
],
"person": {
"id": "60f7f0f7-c9ad-4219-bbdb-c1560caf2320",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "8e62b866-6719-4eb1-905f-df52633092fa",
"roles": [
"publisher"
],
"organization": {
"id": "fd17b9d8-f605-4344-98e7-c7c49aa0a797",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository contains a StarDist deep learning model and its training and validation datasets for segmenting endothelial nuclei while ignoring cancer cells. The cancer cells were perfused over an endothelial cell monolayer. The initial dataset consisted of 17 images, where cancer cell nuclei were manually removed after segmentation with the StarDist Versatile Nuclei model. This dataset was augmented to 68 paired images using computational techniques like rotation and flipping. The model was trained for 200 epochs, achieving an average F1 Score of 0.976, demonstrating high accuracy in segmenting endothelial nuclei while excluding cancer cells.\r\n\r\nSpecifications\r\n\r\n\r\n\r\n\r\n\r\nModel: StarDist for segmenting endothelial nuclei while ignoring cancer cells\r\n\r\n\r\n\r\n\r\nTraining Dataset:\r\n\r\n\r\n\r\n\r\n\r\n\r\nNumber of Original Images: 17 paired predictions of nuclei and label images\r\n\r\n\r\n\r\n\r\nAugmented Dataset: Expanded to 68 paired images using rotation and flipping\r\n\r\n\r\n\r\n\r\nSource Image Generation: Generated using a pix2pix model trained to predict nuclei from brightfield images of cancer cells on top of an endothelium (DOI: 10.5281/zenodo.10617532)\r\n\r\n\r\n\r\n\r\nTarget Image Generation: Masks obtained via manual segmentation\r\n\r\n\r\n\r\n\r\nFile Format: TIFF (.tif)\r\n\r\n\r\n\r\n\r\n\r\n\r\nBrightfield Images: 8-bit\r\n\r\n\r\n\r\n\r\nMasks: 8-bit\r\n\r\n\r\n\r\n\r\n\r\nImage Size: 1024 x 1022 pixels (uncalibrated)\r\n\r\n\r\n\r\n\r\n\r\nTraining Parameters:\r\n\r\n\r\n\r\n\r\n\r\n\r\nEpochs: 200\r\n\r\n\r\n\r\n\r\nPatch Size: 1024 x 1024 pixels\r\n\r\n\r\n\r\n\r\nBatch Size: 2\r\n\r\n\r\n\r\n\r\n\r\nPerformance:\r\n\r\n\r\n\r\n\r\n\r\n\r\nAverage F1 Score: 0.976\r\n\r\n\r\n\r\n\r\nAverage IoU: 0.927\r\n\r\n\r\n\r\n\r\n\r\nModel Training: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)\r\n\r\n\r\n\r\n\r\n\r\nReference\r\n\r\nFast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers\r\n\r\n\r\nGautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet\r\n\r\nbioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-02-05",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.10617531",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "StarDist_HUVEC_nuclei_dataset"
},
"created": "2025-11-14T07:37:09Z",
"modified": "2025-11-14T07:37:09Z",
"dataset_versions": [
{
"id": "6ca826cc-a9fa-4526-9a59-bcf525ae1816",
"title": {
"en": "StarDist_HUVEC_nuclei_dataset"
},
"persistent_identifier": "doi:10.5281/zenodo.10617531",
"state": "published",
"created": "2025-11-14T07:37:09Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "92701119-fbd2-4035-92ee-2c00894bff22",
"access_rights": {
"id": "08b9f037-ee98-487e-8763-ab31670e6b90",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "c408338f-6922-4629-91c7-2cf7323aca33",
"roles": [
"creator"
],
"person": {
"id": "d8101593-0344-4107-a153-37a94469de67",
"name": "Eero Asmala"
},
"organization": {
"id": "80dc52f2-6a29-4357-9159-68ecc49f44b9",
"pref_label": {
"en": "Geological Survey of Finland",
"fi": "Geological Survey of Finland",
"sv": "Geological Survey of Finland"
},
"external_identifier": "https://ror.org/03vjnqy43"
}
},
{
"id": "4dd26504-7877-4e0f-bb6e-dc9bed007dc0",
"roles": [
"creator"
],
"person": {
"id": "d240c82c-c776-48e7-a5d9-f4522118cad6",
"name": "Peter Österholm"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "785a8a89-7162-43a8-bc9f-3a815f49727a",
"roles": [
"creator"
],
"person": {
"id": "dffee6a6-bac5-45b4-8190-29b248d42c0c",
"name": "Joonas J Virtasalo"
},
"organization": {
"id": "80dc52f2-6a29-4357-9159-68ecc49f44b9",
"pref_label": {
"en": "Geological Survey of Finland",
"fi": "Geological Survey of Finland",
"sv": "Geological Survey of Finland"
},
"external_identifier": "https://ror.org/03vjnqy43"
}
},
{
"id": "52a2bf23-3d14-4fff-b518-cc5bbf1b9d16",
"roles": [
"publisher"
],
"organization": {
"id": "f9789fef-89d6-4757-9efe-656f0bad9c22",
"pref_label": {
"en": "PANGAEA",
"fi": "PANGAEA",
"sv": "PANGAEA"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Water samples were collected from the Laihianjoki and Sulvanjoki rivers in April 2021, using a bucket and transferred to 30 L acid-washed containers. The sampling was conducted during springtime, a few weeks after the peak flow caused by snow smelt. The collected river waters were immediately analyzed for pH, temperature, electrical conductivity, and salinity using a WTW Multiline P4 meter. The samples were then transported to the Tvärminne field station of the University of Helsinki, where laboratory experiments began within 24 hours.A large-volume bucket experiment was conducted to study the dynamics of suspended particle size distribution and associated nutrients during the transition from fresh to brackish water conditions. Artificial seawater with salinity of 66.8 g kg-1 was added to river water in an acid-washed basin, while changes in water chemistry and particle size distribution were continuously monitored using a multiparameter water quality sonde and a laser-diffraction particle size analyzer. Additionally, small-volume jar experiments were performed to collect particle samples under controlled conditions using a flocculator apparatus. The collected material was analyzed, and the filtrate was used for further analysis of colored dissolved organic matter.Triplicate samples from flocculator experiments were acidified and analyzed for metal concentrations using an inductively coupled plasma optical emission spectrometer (ICP-OES) and an inductively coupled plasma mass spectrometer (ICP-MS). Filtrate samples were measured for colored dissolved organic matter (CDOM) absorbance and fluorescence using a spectrophotometer and a spectrofluorometer, respectively. Particulate organic carbon (POC) and particulate organic-bound metals were analyzed in filter retentate samples using a mass spectrometer and ICP-MS. Total suspended matter (TSM) was determined by filtering and weighing samples. The apparent particle density was calculated by dividing TSM by volumetric concentrations measured by a laser-diffraction particle size analyzer. However, the density results are biased as particles larger than the detection limit of the instrument are not included in the analysis."
},
"field_of_science": [
{
"id": "7334f2e9-1aae-4b87-9088-8226211b06c9",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1171",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Geosciences",
"fi": "Geotieteet",
"sv": "Geovetenskaper"
}
}
],
"infrastructure": [],
"issued": "2023-11-09",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.1594/pangaea.961685",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Suspension particle size and water quality data from Laihianjoki and Sulvanjoki flocculation experiments in April 2021"
},
"created": "2025-11-14T07:37:06Z",
"modified": "2025-11-14T07:37:06Z",
"dataset_versions": [
{
"id": "92701119-fbd2-4035-92ee-2c00894bff22",
"title": {
"en": "Suspension particle size and water quality data from Laihianjoki and Sulvanjoki flocculation experiments in April 2021"
},
"persistent_identifier": "doi:10.1594/pangaea.961685",
"state": "published",
"created": "2025-11-14T07:37:06Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "dfc93ed0-aa2c-450c-8551-a4bc70ae4ec3",
"access_rights": {
"id": "c9b65082-71a4-45c0-adcd-1018d1035573",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "97e800ae-e908-43ee-927c-e43a28f2fec5",
"roles": [
"creator"
],
"person": {
"id": "01003fcf-8146-4524-ac52-bf1d66ff4e32",
"name": "Gautier Follain"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "67575527-3b77-48fb-a4c7-0a2e884f77b5",
"roles": [
"creator"
],
"person": {
"id": "f7eaabce-32bb-4208-b0aa-3b30362ed6f2",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "9bc70a72-f232-419c-b030-d102ef25af23",
"roles": [
"creator"
],
"person": {
"id": "125b4e2c-edb7-4a83-888d-13df2bbf2cb3",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c5842225-3c30-4cbd-af32-7b6a7fdaa7e7",
"roles": [
"creator"
],
"person": {
"id": "59f37224-0fe7-4426-847f-5d2833fc17b4",
"name": "Johanna Ivaska"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "1a681a47-91b8-4db0-ac23-92ecc42b0762",
"roles": [
"creator"
],
"person": {
"id": "64cc2703-a0e8-4385-9d99-6aa42cc4fea5",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "0fd6255b-6fbc-4ead-9660-00bea5b0ab73",
"roles": [
"publisher"
],
"organization": {
"id": "26323828-52c1-4dcc-9e15-38006a14626a",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository contains a StarDist deep learning model and its training and validation datasets designed for segmenting cancer cells perfused over an endothelial cell monolayer captured at 20x magnification. Using computational methods, the initial dataset of 20 manually annotated images was augmented to 160 paired images. The model was trained over 400 epochs and achieved an average F1 Score of 0.921, demonstrating high accuracy in cell segmentation tasks.\r\n\r\nSpecifications\r\n\r\n\r\n\r\n\r\n\r\nModel: StarDist for cancer cell segmentation on endothelial cells (20x magnification)\r\n\r\n\r\n\r\n\r\nTraining Dataset:\r\n\r\n\r\n\r\n\r\n\r\n\r\nNumber of Original Images: 20 paired brightfield microscopy images and label masks\r\n\r\n\r\n\r\n\r\nMicroscope: Nikon Eclipse Ti2-E, 20x objective\r\n\r\n\r\n\r\n\r\nData Type: Brightfield microscopy images with manually segmented masks\r\n\r\n\r\n\r\n\r\nFile Format: TIFF (.tif)\r\n\r\n\r\n\r\n\r\n\r\n\r\nBrightfield Images: 16-bit\r\n\r\n\r\n\r\n\r\nMasks: 8-bit\r\n\r\n\r\n\r\n\r\n\r\nImage Size: 1024 x 1022 pixels (Pixel size: 650 nm)\r\n\r\n\r\n\r\n\r\n\r\nTraining Parameters:\r\n\r\n\r\n\r\n\r\n\r\n\r\nEpochs: 400\r\n\r\n\r\n\r\n\r\nPatch Size: 992 x 992 pixels\r\n\r\n\r\n\r\n\r\nBatch Size: 2\r\n\r\n\r\n\r\n\r\n\r\nPerformance:\r\n\r\n\r\n\r\n\r\n\r\n\r\nAverage F1 Score: 0.921\r\n\r\n\r\n\r\n\r\nAverage IoU: 0.793\r\n\r\n\r\n\r\n\r\n\r\nModel Training: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\nReference\r\n\r\nFast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers\r\n\r\n\r\nGautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet\r\n\r\nbioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-01-26",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.10572121",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "StarDist_BF_cancer_cell_dataset_20x"
},
"created": "2025-11-14T07:37:03Z",
"modified": "2025-11-14T07:37:03Z",
"dataset_versions": [
{
"id": "dfc93ed0-aa2c-450c-8551-a4bc70ae4ec3",
"title": {
"en": "StarDist_BF_cancer_cell_dataset_20x"
},
"persistent_identifier": "doi:10.5281/zenodo.10572121",
"state": "published",
"created": "2025-11-14T07:37:03Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "aaefe823-3cc5-4444-ae26-a4c09744c273",
"access_rights": {
"id": "8b05370d-ab7b-4e81-844b-560b7a4bc77d",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "33e149e8-39a8-4ee8-bd84-8ad4ff410034",
"roles": [
"creator"
],
"person": {
"id": "a2577bab-2a12-4edd-8f83-a8e4e548c914",
"name": "Wali Inam"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "bf277986-7065-4805-8506-9cedf70bcdf4",
"roles": [
"creator"
],
"person": {
"id": "a0f6d2c2-0eeb-4ec3-99f2-024f62dc399a",
"name": "Rajendra Bhadane",
"external_identifier": "https://orcid.org/0000-0002-7330-4801"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "b37fead2-3f39-48bc-b27a-935cc6331d7b",
"roles": [
"creator"
],
"person": {
"id": "8f6b78ad-7d08-4697-9d5e-8cb3c583a95f",
"name": "Jiaqi Yan"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "893105e9-997e-43fa-bce9-16dce7d4e441",
"roles": [
"creator"
],
"person": {
"id": "b9ffd86c-24f4-443b-b1e1-c0bad782e6ff",
"name": "Markus Peurla"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "2f1f2123-d653-4b82-8bdb-8855664554ea",
"roles": [
"creator"
],
"person": {
"id": "2089b739-9ebe-47ae-a8ce-c2ddbfb48228",
"name": "Outi Salo-Ahen",
"external_identifier": "https://orcid.org/0000-0003-0725-126X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "3d2d116d-6dae-4c43-a057-15e09a4fd50f",
"roles": [
"creator"
],
"person": {
"id": "09682ec8-1881-4027-9a1b-45fdb510b8f2",
"name": "Jessica Rosenholm",
"external_identifier": "https://orcid.org/0000-0001-6085-1112"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "f1c4fbea-925e-4399-8e2b-204b68118568",
"roles": [
"creator"
],
"person": {
"id": "799150bf-1e6a-4940-b8fd-22930c9cf405",
"name": "Hongbo Zhang",
"external_identifier": "https://orcid.org/0000-0002-1071-4416"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "a51045d1-f4a9-4946-bca8-b2119dc161dd",
"roles": [
"publisher"
],
"organization": {
"id": "d2cd3d1e-7b0c-4cbc-90d5-652107860fd4",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "He we like to publish data related to modified and non-modified MSN cores analysed using microfluidics platform against acetalated dextran (AcDEX)/spermine modified acetalated dextran (SpAcDEX) polymers. \r\n\r\nThe data contains Dynamic light scattering (DLS) and TEM images which help us to to the demarcation of combinations which formed successful core/shell particles along with, in-silico modelling and molecular dynamics (MD) simulations data showing molecular interactions between the core particles and the encapsulant polymer."
},
"field_of_science": [
{
"id": "182af513-b646-4401-9363-b27914702936",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta317",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Pharmacy",
"fi": "Farmasia",
"sv": "Farmaci"
}
}
],
"infrastructure": [],
"issued": "2024-04-05",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.10931142",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Design and assembly of core/shell nanostructures as investigated by microfluidics and molecular dynamics simulation_dataset_DLS_TEM_MD"
},
"created": "2025-11-14T07:37:00Z",
"modified": "2025-11-14T07:37:00Z",
"dataset_versions": [
{
"id": "aaefe823-3cc5-4444-ae26-a4c09744c273",
"title": {
"en": "Design and assembly of core/shell nanostructures as investigated by microfluidics and molecular dynamics simulation_dataset_DLS_TEM_MD"
},
"persistent_identifier": "doi:10.5281/zenodo.10931142",
"state": "published",
"created": "2025-11-14T07:37:00Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "46c061b3-d704-4d1d-befd-43f2bfbd87fc",
"access_rights": {
"id": "a1680a31-e6ea-4a38-813a-406fc9b31008",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "77673d4f-630e-4d1c-9b21-0d91054a7d2e",
"roles": [
"creator"
],
"person": {
"id": "0c108489-0826-4ded-8f33-8e9efa3a7aad",
"name": "Jussi Heinonen",
"external_identifier": "https://orcid.org/0000-0001-8998-4357"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "bf7be758-415e-4456-a534-ef6f5b56549a",
"roles": [
"creator"
],
"person": {
"id": "e0e935f0-2d63-4065-8640-9047c34a9061",
"name": "Arto Vesa Luttinen"
},
"organization": {
"id": "b5883b71-2d1f-4a1c-94ba-765cdfb35119",
"pref_label": {
"en": "University of Helsinki",
"fi": "Helsingin yliopisto",
"sv": "Helsingfors universitet"
},
"external_identifier": "https://ror.org/040af2s02"
}
},
{
"id": "978a2629-0843-4094-b725-4a34a6b494e6",
"roles": [
"publisher"
],
"organization": {
"id": "ee5a44ff-5d2d-4084-83bc-efb9752f22dc",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This is handheld XRF data collected from Jurassic continental flood basalts during the FINNARP 2022/2023 expedition to Antarctica. Researchers: Jussi S. Heinonen (jussi.heinonen@abo.fi) Åbo Akademi University/University of Helsinki; Arto Luttinen (arto.luttinen@helsinki.fi) University of HelsinkiLinks: Finnish Meteorological Institute (home of FINNARP operations): https://en.ilmatieteenlaitos.fi/This data is used in a manuscript \"Tracing the volcanic sources and differentiation of flood basalts in the field using handheld XRF\""
},
"field_of_science": [
{
"id": "7334f2e9-1aae-4b87-9088-8226211b06c9",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1171",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Geosciences",
"fi": "Geotieteet",
"sv": "Geovetenskaper"
}
}
],
"infrastructure": [],
"issued": "2025-10-13",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.17341456",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Handheld XRF data collected from Jurassic continental flood basalts during the FINNARP 2022/2023 expedition to Antarctica"
},
"created": "2025-11-14T07:36:58Z",
"modified": "2025-11-14T07:36:58Z",
"dataset_versions": [
{
"id": "46c061b3-d704-4d1d-befd-43f2bfbd87fc",
"title": {
"en": "Handheld XRF data collected from Jurassic continental flood basalts during the FINNARP 2022/2023 expedition to Antarctica"
},
"persistent_identifier": "doi:10.5281/zenodo.17341456",
"state": "published",
"created": "2025-11-14T07:36:58Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "179489d4-158a-46c3-9dbe-74818ef2fc03",
"access_rights": {
"id": "5cdeddd7-8a6c-495b-9bce-3a8f0eb59d04",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "36da5a7b-8e60-42d7-8f09-5b8f193dd83b",
"roles": [
"creator"
],
"person": {
"id": "e052f10a-0b85-47fb-be61-2156ca66728e",
"name": "Kelly Velasco"
},
"organization": {
"id": "7bc284b6-d590-487f-a945-26724986e9d4",
"pref_label": {
"en": "University of Bergen",
"fi": "Bergenin Yliopisto",
"sv": "University of Bergen"
},
"external_identifier": "https://ror.org/03zga2b32"
}
},
{
"id": "03dc8812-bdc3-414d-b9a2-938cc1a159ff",
"roles": [
"creator"
],
"person": {
"id": "20c71478-f362-4304-bcfb-e872348e6aae",
"name": "Janniche Torsvik"
},
"organization": {
"id": "7bc284b6-d590-487f-a945-26724986e9d4",
"pref_label": {
"en": "University of Bergen",
"fi": "Bergenin Yliopisto",
"sv": "University of Bergen"
},
"external_identifier": "https://ror.org/03zga2b32"
}
},
{
"id": "f2763235-152d-47a9-8675-ba29dd3e75e2",
"roles": [
"creator"
],
"person": {
"id": "4e84baca-c3f2-48f7-b61d-97053c659c1b",
"name": "Johanna L. St-Louis"
},
"organization": {
"id": "7bc284b6-d590-487f-a945-26724986e9d4",
"pref_label": {
"en": "University of Bergen",
"fi": "Bergenin Yliopisto",
"sv": "University of Bergen"
},
"external_identifier": "https://ror.org/03zga2b32"
}
},
{
"id": "a0bee357-a139-423d-baad-bc4ffe10d7d8",
"roles": [
"creator"
],
"person": {
"id": "22a46fb0-0f72-430b-9f50-a4ed06a9722b",
"name": "Sarah Baghestani"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "b988a51a-8fbe-48ac-9341-0c42b3aa8603",
"roles": [
"creator"
],
"person": {
"id": "3146054c-0875-4dad-97a3-66b919db960e",
"name": "Jonas S. G. Silvander"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "75cbf9c9-3473-4634-89ab-5eebaf15fe30",
"roles": [
"creator"
],
"person": {
"id": "99274206-e634-483c-ac09-f8e495cac2ca",
"name": "Rohit N. Kulkarni"
},
"organization": {
"id": "d0580818-934f-4b9a-b9b8-d52bf9761451",
"pref_label": {
"en": "Harvard Stem Cell Institute"
}
}
},
{
"id": "af1f2bd6-7664-4713-be19-3ff13e04849e",
"roles": [
"creator"
],
"person": {
"id": "04665479-7454-47ff-9e56-d22b724f2716",
"name": "Diana M. Toivola",
"external_identifier": "https://orcid.org/0000-0001-7165-9839"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "41299366-08e9-4977-9ee3-5bdad8b38c77",
"roles": [
"creator"
],
"person": {
"id": "54d7004a-bd9e-494f-bcf9-85e24e6809ce",
"name": "Anders Molven"
},
"organization": {
"id": "7bc284b6-d590-487f-a945-26724986e9d4",
"pref_label": {
"en": "University of Bergen",
"fi": "Bergenin Yliopisto",
"sv": "University of Bergen"
},
"external_identifier": "https://ror.org/03zga2b32"
}
},
{
"id": "e85ce6e8-dc33-42c2-af8e-8191902a3117",
"roles": [
"publisher"
],
"organization": {
"id": "dc952b1e-6718-46ff-9941-aac1c97aa58b",
"pref_label": {
"en": "figshare",
"fi": "figshare",
"sv": "figshare"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Supplementary Material 2"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2025-06-06",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.6084/m9.figshare.29252440",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Additional file 2 of Searching for protein partners of short-chain 3-hydroxyacyl-CoA dehydrogenase (SCHAD) reveals keratin 8 as a novel candidate for interaction in pancreatic β-cells"
},
"created": "2025-11-14T07:36:55Z",
"modified": "2025-11-14T07:36:55Z",
"dataset_versions": [
{
"id": "179489d4-158a-46c3-9dbe-74818ef2fc03",
"title": {
"en": "Additional file 2 of Searching for protein partners of short-chain 3-hydroxyacyl-CoA dehydrogenase (SCHAD) reveals keratin 8 as a novel candidate for interaction in pancreatic β-cells"
},
"persistent_identifier": "doi:10.6084/m9.figshare.29252440",
"state": "published",
"created": "2025-11-14T07:36:55Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "0d3a0a2f-3bd0-4e2f-b10b-bd0e2f6a93e2",
"access_rights": {
"id": "fe5aeec5-4af9-4f6d-a7e1-def16c1286e6",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "ce738927-f9e3-4210-a76f-eacde8d59169",
"roles": [
"creator"
],
"person": {
"id": "afca029d-ea32-49a9-afd6-6273418737fc",
"name": "Gautier Follain"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "04c49c55-533b-4f67-bcf5-9c53a4e7362c",
"roles": [
"creator"
],
"person": {
"id": "e247a8e6-cc9d-40f0-a8a9-f93ddae97187",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "0909c476-ee42-40cc-9e4b-5cd99091ce98",
"roles": [
"creator"
],
"person": {
"id": "b756d42d-5bd4-4cc5-9788-7c5de0248723",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "0672ef5f-9b7e-4ba4-be67-d3e2fffd4c33",
"roles": [
"creator"
],
"person": {
"id": "fc942b75-1e17-4161-adb6-36de0b033324",
"name": "Johanna Ivaska"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "66f039fb-35d0-43e9-a439-f847a2a39905",
"roles": [
"creator"
],
"person": {
"id": "b71c031f-2fbf-4bac-9c34-ac6ce2d6e4d2",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "0f23c80c-29d0-4a3e-9bbb-2094758dfef7",
"roles": [
"publisher"
],
"organization": {
"id": "c4f0e7f7-1a00-492d-af50-dd2bbc59d358",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository includes a StarDist deep learning model designed for segmenting AsPC1 cells labeled with Lifeact from fluorescence microscopy images. The model distinguishes individual AsPC1 cells within clusters and separates them from the background. The model was trained on a small dataset and achieved an Intersection over Union (IoU) score of 0.884 and an F1 Score of 0.967, indicating high accuracy in cell segmentation.\r\n\r\nSpecifications\r\n\r\n\r\n\r\n\r\n\r\nModel: StarDist for segmenting AsPC1 cells in fluorescence microscopy images\r\n\r\n\r\n\r\n\r\nTraining Dataset:\r\n\r\n\r\n\r\n\r\n\r\n\r\nNumber of Images: 10 paired fluorescence microscopy images and label masks\r\n\r\n\r\n\r\n\r\nMicroscope: Spinning disk confocal microscope (3i CSU-W1) with a 20x objective, NA 0.8\r\n\r\n\r\n\r\n\r\nData Type: Fluorescence microscopy images of the AsPC1 Lifeact channel with manually segmented masks\r\n\r\n\r\n\r\n\r\nFile Format: TIFF (.tif)\r\n\r\n\r\n\r\n\r\n\r\n\r\nFluorescence Images: 16-bit\r\n\r\n\r\n\r\n\r\nMasks: 8-bit\r\n\r\n\r\n\r\n\r\n\r\nImage Size: 1024 x 1024 pixels (Pixel size: 0.6337 x 0.6337 µm²)\r\n\r\n\r\n\r\n\r\n\r\nModel Capabilities:\r\n\r\n\r\n\r\n\r\n\r\n\r\nSegment AsPC1 Cells: Detects individual AsPC1 cells from a cluster and separates them from the background\r\n\r\n\r\n\r\n\r\nMeasure Intensity: Enables measurement of CD44, ICAM1, ICAM2, or Fibronectin intensity under individual cells in respective channels\r\n\r\n\r\n\r\n\r\n\r\nPerformance:\r\n\r\n\r\n\r\n\r\n\r\n\r\nAverage IoU: 0.884\r\n\r\n\r\n\r\n\r\nAverage F1 Score: 0.967\r\n\r\n\r\n\r\n\r\n\r\nModel Training: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)\r\n\r\n\r\n\r\n\r\n\r\nReference\r\n\r\nFast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers\r\n\r\n\r\nGautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet\r\n\r\nbioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-29",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13442127",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "StarDist_AsPC1_Lifeact"
},
"created": "2025-11-14T07:36:52Z",
"modified": "2025-11-14T07:36:52Z",
"dataset_versions": [
{
"id": "0d3a0a2f-3bd0-4e2f-b10b-bd0e2f6a93e2",
"title": {
"en": "StarDist_AsPC1_Lifeact"
},
"persistent_identifier": "doi:10.5281/zenodo.13442127",
"state": "published",
"created": "2025-11-14T07:36:52Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "a8c0a9a8-ca94-4611-8361-828a137c0aca",
"access_rights": {
"id": "ea8e2464-1656-45b6-bc6c-3418b3eac1b7",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "1224887c-7c25-4799-8cdd-4de5b33d955a",
"roles": [
"creator"
],
"person": {
"id": "bb97053e-4b04-4b77-b84d-c0e9d89c8d5e",
"name": "Gautier Follain"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "4227772e-b38f-48b9-9a46-f30a1e8db47a",
"roles": [
"creator"
],
"person": {
"id": "534c035b-d6a5-404c-8b60-c316d825d14c",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "e147e102-4b93-4e42-9792-354f1f183683",
"roles": [
"creator"
],
"person": {
"id": "dfdde04f-5105-439e-80d6-495cf1b83b14",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "3d073bce-45bf-47ff-9d75-fa6493ab459b",
"roles": [
"creator"
],
"person": {
"id": "901374dd-26f3-4dd8-85f5-a09ad53ec45c",
"name": "Johanna Ivaska"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "60aea4fa-b89f-4004-8f9c-0d1a9264ca33",
"roles": [
"creator"
],
"person": {
"id": "cdaf3cb5-524f-4acc-996e-65ec775bc94d",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "a763e668-1c4f-42f7-af94-9bc15c76693b",
"roles": [
"publisher"
],
"organization": {
"id": "e93bcfaf-5c69-4b3a-b4ab-da2d95cdf018",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository contains a Pix2Pix deep learning model to generate synthetic nuclear staining from brightfield images. The model was trained on 258 paired brightfield and fluorescent microscopy images of circulating cancer cells perfused over an endothelial cell monolayer. To improve performance, the dataset was augmented computationally by a factor of 8. The model was trained over 400 epochs using a patch size of 512x512, a batch size of 1, and a vanilla GAN loss function. The final model was selected based on its performance metrics and visual fidelity when compared to ground truth images, achieving an average SSIM score of 0.755 and an LPIPS score of 0.120.\r\n\r\nSpecifications\r\n\r\n\r\n\r\n\r\n\r\nModel: Pix2Pix for generating synthetic nuclear staining from brightfield images\r\n\r\n\r\n\r\n\r\nTraining Dataset:\r\n\r\n\r\n\r\n\r\n\r\n\r\nCancer Cells: 258 paired brightfield and fluorescent microscopy images\r\n\r\n\r\n\r\n\r\nMicroscope: Nikon Eclipse Ti2-E, brightfield/fluorescence microscope with a 20x objective\r\n\r\n\r\n\r\n\r\nData Type: Brightfield and fluorescent microscopy images\r\n\r\n\r\n\r\n\r\nFile Format: TIFF (.tif), 16-bit\r\n\r\n\r\n\r\n\r\nImage Size: 1024 x 1022 pixels (Pixel size: 650 nm)\r\n\r\n\r\n\r\n\r\n\r\nTraining Parameters:\r\n\r\n\r\n\r\n\r\n\r\n\r\nEpochs: 400\r\n\r\n\r\n\r\n\r\nPatch Size: 512 x 512 pixels\r\n\r\n\r\n\r\n\r\nBatch Size: 1\r\n\r\n\r\n\r\n\r\nLoss Function: Vanilla GAN loss function\r\n\r\n\r\n\r\n\r\n\r\nModel Performance:\r\n\r\n\r\n\r\n\r\n\r\n\r\nCirculating Cancer Cells:\r\n\r\n\r\n\r\n\r\n\r\n\r\nSSIM Score: 0.755\r\n\r\n\r\n\r\n\r\nLPIPS Score: 0.120\r\n\r\n\r\n\r\n\r\n\r\n\r\nModel Selection: Models were selected based on quality metric scores and visual inspection compared to ground truth images.\r\n\r\n\r\n\r\n\r\nModel Training: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)\r\n\r\n\r\n\r\n\r\n\r\nReference\r\n\r\nFast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers\r\n\r\n\r\nGautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet\r\n\r\nbioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-02-05",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.10621666",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "pix2pix_HUVEC_nuclei_cancer_cells_dataset"
},
"created": "2025-11-14T07:36:50Z",
"modified": "2025-11-14T07:36:50Z",
"dataset_versions": [
{
"id": "a8c0a9a8-ca94-4611-8361-828a137c0aca",
"title": {
"en": "pix2pix_HUVEC_nuclei_cancer_cells_dataset"
},
"persistent_identifier": "doi:10.5281/zenodo.10621666",
"state": "published",
"created": "2025-11-14T07:36:50Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "713fdbf5-3d6c-44c0-ade1-94af6bc45602",
"access_rights": {
"id": "d31a9f30-521e-4a6a-be1f-b5237ac95edd",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "a4f39163-b457-48df-8a10-72bf56e3b723",
"roles": [
"creator"
],
"person": {
"id": "74b52716-c3d3-419b-89f2-3b695894b337",
"name": "Valentin R. Troll"
},
"organization": {
"id": "fd4bd47d-966f-4bd5-aa0e-1816f89834fc",
"pref_label": {
"en": "Uppsala University",
"fi": "Uppsalan yliopisto",
"sv": "Uppsala universitet"
},
"external_identifier": "https://ror.org/048a87296"
}
},
{
"id": "2b6b515e-492d-4335-b509-80c478df12cd",
"roles": [
"creator"
],
"person": {
"id": "6d84b7c4-8573-42db-bca6-381305d8c1d6",
"name": "Frances M. Deegan"
},
"organization": {
"id": "fd4bd47d-966f-4bd5-aa0e-1816f89834fc",
"pref_label": {
"en": "Uppsala University",
"fi": "Uppsalan yliopisto",
"sv": "Uppsala universitet"
},
"external_identifier": "https://ror.org/048a87296"
}
},
{
"id": "fbd9a435-75ae-4bbf-abde-c4715581ff3f",
"roles": [
"creator"
],
"person": {
"id": "969a3cc1-1c64-47a8-8cf4-b10a9f73af38",
"name": "Jussi S. Heinonen",
"external_identifier": "https://orcid.org/0000-0001-8998-4357"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c7a254cf-1bd0-4113-965c-e79e9a47a431",
"roles": [
"creator"
],
"person": {
"id": "7dc8e512-32f9-4181-859a-a9a15e98180c",
"name": "Caroline Svanholm"
},
"organization": {
"id": "fd4bd47d-966f-4bd5-aa0e-1816f89834fc",
"pref_label": {
"en": "Uppsala University",
"fi": "Uppsalan yliopisto",
"sv": "Uppsala universitet"
},
"external_identifier": "https://ror.org/048a87296"
}
},
{
"id": "720faf99-2d19-4ff1-9bbd-85f7406cc98c",
"roles": [
"creator"
],
"person": {
"id": "6c4d9758-511c-4a55-90ba-c2075435e960",
"name": "Chris Harris"
},
"organization": {
"id": "9ab594f8-b852-4a45-b7ec-71f4b06ebc03",
"pref_label": {
"en": "University of Cape Town",
"fi": "University of Cape Town",
"sv": "University of Cape Town"
},
"external_identifier": "https://ror.org/03p74gp79"
}
},
{
"id": "bef42468-9279-4dc4-ba92-f92887ded8bc",
"roles": [
"creator"
],
"person": {
"id": "ec241109-bca7-466f-92e5-eb2c6eb9153a",
"name": "Harri Geiger"
},
"organization": {
"id": "5a7c0df5-578c-4c4d-88be-33d1c3f33b77",
"pref_label": {
"en": "University of Freiburg",
"fi": "University of Freiburg",
"sv": "University of Freiburg"
},
"external_identifier": "https://ror.org/0245cg223"
}
},
{
"id": "5c54ad0a-4a73-48fb-bb66-29af180d58f0",
"roles": [
"creator"
],
"person": {
"id": "3f053c56-bfe6-4af8-9ad1-7eac4d60e4e1",
"name": "Agata Poganj"
},
"organization": {
"id": "fd4bd47d-966f-4bd5-aa0e-1816f89834fc",
"pref_label": {
"en": "Uppsala University",
"fi": "Uppsalan yliopisto",
"sv": "Uppsala universitet"
},
"external_identifier": "https://ror.org/048a87296"
}
},
{
"id": "d0302db1-d01b-42ed-8d4a-92c98faf3a04",
"roles": [
"creator"
],
"person": {
"id": "6017b45f-b6cc-47dd-a9fd-e73c1efdf3b5",
"name": "Louise Thomas"
},
"organization": {
"id": "8f5032fb-c368-47e0-83e3-e44671b47abf",
"pref_label": {
"en": "The Open University",
"fi": "The Open University",
"sv": "The Open University"
},
"external_identifier": "https://ror.org/05mzfcs16"
}
},
{
"id": "5d16d023-d67c-4f1e-a59b-a9d0bba98a01",
"roles": [
"creator"
],
"person": {
"id": "6e2c4cae-cc7f-4a03-a50a-1be7c7d01200",
"name": "Malin Andersson"
},
"organization": {
"id": "fd4bd47d-966f-4bd5-aa0e-1816f89834fc",
"pref_label": {
"en": "Uppsala University",
"fi": "Uppsalan yliopisto",
"sv": "Uppsala universitet"
},
"external_identifier": "https://ror.org/048a87296"
}
},
{
"id": "5ee14f2b-cee9-45da-aa7b-d25a5ab5a353",
"roles": [
"creator"
],
"person": {
"id": "6ca43c8c-f169-40f4-b178-3944013043ad",
"name": "Romain Meyer"
},
"organization": {
"id": "53f9cbdc-30d2-4701-b0c1-5e594a963aae",
"pref_label": {
"en": "Service géologique du Luxembourg"
}
}
},
{
"id": "cf263571-0ee0-4b9e-8636-2eabe2fad046",
"roles": [
"creator"
],
"person": {
"id": "93813453-aa1b-4b0e-8744-df38008e2d7d",
"name": "Thorvaldur Thordarson"
},
"organization": {
"id": "cac173a4-1401-41cf-9443-319dff939d7b",
"pref_label": {
"en": "University of Iceland",
"fi": "University of Iceland",
"sv": "University of Iceland"
},
"external_identifier": "https://ror.org/01db6h964"
}
},
{
"id": "bf1fae70-d6d0-4598-b4ca-2086684b72ae",
"roles": [
"publisher"
],
"organization": {
"id": "13c3f125-7a65-48cd-b468-1bdec6161e4c",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Data presented in Excel and PDF format to accompany the paper \"Origin of Silicic Magmatism at the Katla Volcanic Complex, South Iceland\" by Troll et al. (2025), published in G-Cubed.\r\n\r\nThe files contain whole-rock major and trace element data from XRF and ICPMS analyses originally published in Lacasse et al. (2007) and Budd et al. (2015) as well as modelling parameters for the Magma Chamber Simulator used in the study. \r\n\r\nLink to the accompanying article: https://doi.org/10.1029/2025GC012319"
},
"field_of_science": [
{
"id": "7334f2e9-1aae-4b87-9088-8226211b06c9",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1171",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Geosciences",
"fi": "Geotieteet",
"sv": "Geovetenskaper"
}
}
],
"infrastructure": [],
"issued": "2025-06-09",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.15039179",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Origin of Silicic Magmatism at the Katla Volcanic Complex, South Iceland"
},
"created": "2025-11-14T07:36:46Z",
"modified": "2025-11-14T07:36:46Z",
"dataset_versions": [
{
"id": "713fdbf5-3d6c-44c0-ade1-94af6bc45602",
"title": {
"en": "Origin of Silicic Magmatism at the Katla Volcanic Complex, South Iceland"
},
"persistent_identifier": "doi:10.5281/zenodo.15039179",
"state": "published",
"created": "2025-11-14T07:36:46Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "0e2f98e7-6e6b-4701-9c89-08e46b484fdc",
"access_rights": {
"id": "a76ddeec-50af-4b37-ab5d-418be8a72269",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "f814dd97-cc70-4fe3-bdd4-e22bf7a66547",
"roles": [
"creator"
],
"person": {
"id": "e14b3fa5-784c-4254-83b1-acaf40329f7c",
"name": "Olli Pitkänen"
},
"organization": {
"id": "f140c132-a65e-4ba5-b80c-b22f2522e717",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "3f9fd873-9c1d-4b0a-b4d4-9f1e5ce4538e",
"roles": [
"creator"
],
"person": {
"id": "18058a45-e258-4f0a-ae21-88a59e9c6b38",
"name": "Nemanja Vucetic"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "dfb5c997-6405-42b7-8a56-cc1571fb15f7",
"roles": [
"creator"
],
"person": {
"id": "92e6d0a8-839c-4a4b-a971-a811c2c472e2",
"name": "Helene Cabaud"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "44e59897-cf80-498e-8df0-c7a5d55429dc",
"roles": [
"creator"
],
"person": {
"id": "c503ad1d-b972-4ed7-8ce5-9e30290401a8",
"name": "Eva Bozo"
},
"organization": {
"id": "f140c132-a65e-4ba5-b80c-b22f2522e717",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "28b3e8fc-2d98-4546-a134-24f4e4325766",
"roles": [
"creator"
],
"person": {
"id": "46de3281-12ef-4586-8f44-328a9eab3bcb",
"name": "Topias Järvinen"
},
"organization": {
"id": "f140c132-a65e-4ba5-b80c-b22f2522e717",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "aada3962-f763-4836-ab21-9bee9041847f",
"roles": [
"creator"
],
"person": {
"id": "d776a8a7-9be6-443e-ba30-cd0546fe2887",
"name": "Jyri-Pekka Mikkola"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "a3295246-b378-4593-8f1a-6278fe95fa93",
"roles": [
"creator"
],
"person": {
"id": "94982dfb-562d-431c-8f04-f841315ec857",
"name": "Krisztian Kordas"
},
"organization": {
"id": "f140c132-a65e-4ba5-b80c-b22f2522e717",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "0fdf119e-b6a3-4da0-b15b-7f0ced59953d",
"roles": [
"publisher"
],
"organization": {
"id": "7669ded4-cef3-49c2-88a0-3bedeb7408cd",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This dataset contains the measurement data for figures (graphs) published in journal article:\r\n\r\nEvaluation of short alkyl chain modified [DBU][TFSI] based ionic liquids as supercapacitor electrolytes (doi: 10.1016/j.electacta.2023.143659)\r\n\r\nby Olli Pitkänen, Nemanja Vucetic, Helene Cabaud, Eva Bozo, Topias Järvinen, Jyri-Pekka Mikkola and Krisztian Kordas"
},
"field_of_science": [
{
"id": "4fca0be9-45d1-4544-9eeb-24dec6bcb0df",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta116",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Chemical sciences",
"fi": "Kemia",
"sv": "Kemi"
}
}
],
"infrastructure": [],
"issued": "2023-11-10",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.10091263",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Evaluation of short alkyl chain modified [DBU][TFSI] based ionic liquids as supercapacitor electrolytesEvaluation of short alkyl chain modified [DBU][TFSI] based ionic liquids as supercapacitor electrolytes (dataset)"
},
"created": "2025-11-14T07:36:43Z",
"modified": "2025-11-14T07:36:43Z",
"dataset_versions": [
{
"id": "0e2f98e7-6e6b-4701-9c89-08e46b484fdc",
"title": {
"en": "Evaluation of short alkyl chain modified [DBU][TFSI] based ionic liquids as supercapacitor electrolytesEvaluation of short alkyl chain modified [DBU][TFSI] based ionic liquids as supercapacitor electrolytes (dataset)"
},
"persistent_identifier": "doi:10.5281/zenodo.10091263",
"state": "published",
"created": "2025-11-14T07:36:43Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "9bf46c95-0ee2-44d9-9725-34579ce1a814",
"access_rights": {
"id": "57c25891-54b8-47c8-a71b-1f7968cfbf1a",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "476b41b0-7f9f-4cb3-910c-0fd6d7cc1395",
"roles": [
"creator"
],
"person": {
"id": "4a4759d4-56f5-40fb-905d-3f9a7bbe29a8",
"name": "Gautier Follain"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "a4c2718f-f111-4b86-81fe-a17363f5f48b",
"roles": [
"creator"
],
"person": {
"id": "ee5fe330-af05-4c82-ae10-15c70c3010d4",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "63d04e63-a059-4c44-809b-fe7f7e898575",
"roles": [
"creator"
],
"person": {
"id": "6eb2b8cf-fd65-4908-abe4-07598115bf99",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c474635b-4c5e-413c-8837-1cab9eb79627",
"roles": [
"creator"
],
"person": {
"id": "62901a62-aa41-4c3b-8371-cc7122b99ce9",
"name": "Johanna Ivaska"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "61c7625f-3307-4bba-b645-829748afd5fd",
"roles": [
"creator"
],
"person": {
"id": "f58f2b60-3949-44f9-8646-f20e8578853c",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "acf5fced-566c-4c6e-81d9-9f77db5196ac",
"roles": [
"publisher"
],
"organization": {
"id": "1c5212c9-7947-4b5e-9e23-d7997dc0aa7b",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository includes a StarDist deep learning model and its training dataset designed for segmenting cancer cells perfused over an endothelial cell monolayer captured at 10x magnification. The model was trained on 77 manually annotated images, with the dataset being computationally augmented during training by a factor of 8. The model was trained for 500 epochs and achieved an average F1 Score of 0.968, indicating high accuracy in segmenting cancer cells on endothelial cells.\r\n\r\nSpecifications\r\n\r\n\r\n\r\n\r\n\r\nModel: StarDist for cancer cell segmentation on endothelial cells (10x magnification)\r\n\r\n\r\n\r\n\r\nTraining Dataset:\r\n\r\n\r\n\r\n\r\n\r\n\r\nNumber of Images: 77 paired brightfield microscopy images and label masks\r\n\r\n\r\n\r\n\r\nAugmented Dataset: Computational augmentation by a factor of 8 during training\r\n\r\n\r\n\r\n\r\nMicroscope: Nikon Eclipse Ti2-E, 10x objective\r\n\r\n\r\n\r\n\r\nData Type: Brightfield microscopy images with manually segmented masks\r\n\r\n\r\n\r\n\r\nFile Format: TIFF (.tif)\r\n\r\n\r\n\r\n\r\n\r\n\r\nBrightfield Images: 16-bit\r\n\r\n\r\n\r\n\r\nMasks: 8-bit or 16-bit\r\n\r\n\r\n\r\n\r\n\r\nImage Size: 1024 x 1022 pixels (pixel size: 1.3148 μm)\r\n\r\n\r\n\r\n\r\n\r\nTraining Parameters:\r\n\r\n\r\n\r\n\r\n\r\n\r\nEpochs: 500\r\n\r\n\r\n\r\n\r\nPatch Size: 992 x 992 pixels\r\n\r\n\r\n\r\n\r\nBatch Size: 2\r\n\r\n\r\n\r\n\r\n\r\nPerformance:\r\n\r\n\r\n\r\n\r\n\r\n\r\nAverage F1 Score: 0.968\r\n\r\n\r\n\r\n\r\nAverage IoU: 0.882\r\n\r\n\r\n\r\n\r\n\r\nModel Training: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)\r\n\r\n\r\n\r\n\r\n\r\nReference\r\n\r\nFast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers\r\n\r\n\r\nGautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet\r\n\r\nbioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-12",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13304398",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "StarDist_BF_cancer_cell_dataset_10x"
},
"created": "2025-11-13T07:37:32Z",
"modified": "2025-11-13T07:37:32Z",
"dataset_versions": [
{
"id": "9bf46c95-0ee2-44d9-9725-34579ce1a814",
"title": {
"en": "StarDist_BF_cancer_cell_dataset_10x"
},
"persistent_identifier": "doi:10.5281/zenodo.13304398",
"state": "published",
"created": "2025-11-13T07:37:32Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "0c3bacf8-a53c-4f24-b513-3061e848c01c",
"access_rights": {
"id": "f57a103b-643b-46ae-bfe4-2b5c8935155e",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "24b1283d-4336-4936-a7f4-7fb49056b60f",
"roles": [
"creator"
],
"person": {
"id": "d01cb92c-5ad1-4a8b-a193-acd831eddc5d",
"name": "Camilla Ekblad"
},
"organization": {
"id": "382412de-47e0-486f-be74-9a15344bb37e",
"pref_label": {
"en": "University of Turku",
"fi": "Turun yliopisto",
"sv": "Åbo universitet"
},
"external_identifier": "https://ror.org/05vghhr25"
}
},
{
"id": "08b83ee0-cfb6-4b24-907a-a56fa3685ac3",
"roles": [
"creator"
],
"person": {
"id": "f219a000-d2cc-47f5-9eee-cc0e68fe21c1",
"name": "Andreas Lindén"
},
"organization": {
"id": "6082aa7f-760a-4572-b319-a80a0528c6fd",
"pref_label": {
"en": "Natural Resources Institute Finland",
"fi": "Natural Resources Institute Finland",
"sv": "Natural Resources Institute Finland"
},
"external_identifier": "https://ror.org/02hb7bm88"
}
},
{
"id": "084e667d-11b1-4ce2-ac6e-c08ef903c71e",
"roles": [
"creator"
],
"person": {
"id": "1856cb7c-f435-4b8f-aefa-e034a49ee248",
"name": "Markus Öst",
"external_identifier": "https://orcid.org/0000-0002-2205-1437"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "e3b88e80-8dd6-44db-99c6-0ee0191fabdd",
"roles": [
"creator"
],
"person": {
"id": "70351c80-ad6a-4043-b69c-1e081330eb47",
"name": "Antti Below"
},
"organization": {
"id": "5cfaf78e-80f9-40b6-896d-2bce4d3b5423",
"pref_label": {
"en": "Metsähallitus (Finland)",
"fi": "Metsähallitus (Finland)",
"sv": "Metsähallitus (Finland)"
},
"external_identifier": "https://ror.org/04571v857"
}
},
{
"id": "b5ab2b7f-3f91-4cd5-8eb0-285326cdbe89",
"roles": [
"creator"
],
"person": {
"id": "7d340d87-0376-4c55-8b48-a2bf7a6bffdc",
"name": "Kim Jaatinen"
},
"organization": {
"id": "b98dd73d-3f4d-4048-9e7d-592fb4511dec",
"pref_label": {
"en": "Finnish Environment Institute",
"fi": "Suomen ympäristökeskus",
"sv": "Finlands miljöcentral"
},
"external_identifier": "https://ror.org/013nat269"
}
},
{
"id": "186cbf74-e1e3-45a7-ac68-22cc52c1f30d",
"roles": [
"creator"
],
"person": {
"id": "63f96bee-bf71-4bda-b24f-dae8029944c0",
"name": "Heikki Lokki"
},
"organization": {
"id": "d828c058-8922-4883-b718-88c6a278c528",
"pref_label": {
"en": "Finnish Museum of Natural History",
"fi": "Luonnontieteellinen keskusmuseo",
"sv": "Naturhistoriska centralmuseet"
}
}
},
{
"id": "99617fbc-27b1-42a1-b8e7-3ea4a43e04bb",
"roles": [
"creator"
],
"person": {
"id": "1e4579a3-d953-495c-a906-783068848ad4",
"name": "Tuomas Seimola"
},
"organization": {
"id": "6082aa7f-760a-4572-b319-a80a0528c6fd",
"pref_label": {
"en": "Natural Resources Institute Finland",
"fi": "Natural Resources Institute Finland",
"sv": "Natural Resources Institute Finland"
},
"external_identifier": "https://ror.org/02hb7bm88"
}
},
{
"id": "883abba1-151d-448e-b021-a2e4d4e4891b",
"roles": [
"creator"
],
"person": {
"id": "c95e63ba-2ea9-4764-9fc9-914c786c122d",
"name": "Hannu Tikkanen"
},
"organization": {
"id": "65174a43-6c35-4816-bc6b-4ffab9f3c610",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "University of Oulu"
},
"external_identifier": "https://ror.org/03yj89h83"
}
},
{
"id": "6075c065-d44d-443c-96eb-91651bc4ab7f",
"roles": [
"creator"
],
"person": {
"id": "4130af19-7c10-4b69-bfd3-b7554a26df1e",
"name": "Toni Laaksonen"
},
"organization": {
"id": "382412de-47e0-486f-be74-9a15344bb37e",
"pref_label": {
"en": "University of Turku",
"fi": "Turun yliopisto",
"sv": "Åbo universitet"
},
"external_identifier": "https://ror.org/05vghhr25"
}
},
{
"id": "2d338937-b13e-4f4e-8be6-989dc22c8219",
"roles": [
"publisher"
],
"organization": {
"id": "0cc3b38e-5c83-4e9f-9621-214653654ded",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "The recovery of some apex predators has led to concerns for endangered prey that may have developed risky habitat selection tactics during predator-free eras. Environmental heterogeneity affects predator-prey coexistence, but spatial redistribution of prey has rarely been studied. A predator-prey system with white-tailed eagles and common eiders provides a unique opportunity to study the effect of returning predators on an abundant but declining prey population.\r\n\r\nOur objective was to investigate how the physical environment affects predator-prey relationships and subsequently the spatial redistribution of the prey population over time, and to perform a large-scale assessment of the population status and distribution of eiders in the North-Eastern Baltic Sea.\r\n\r\nUsing extensive survey data from the Finnish coast from 1997–2020 on predator and prey breeding numbers, we constructed a spatiotemporal model explaining the distribution of eiders on >3600 islands across highly variable coastal regions. We assessed how the proximity of nesting eagles affected eider abundance, mediated by properties related to physical nest shelter (archipelago type and island forest cover).\r\n\r\nBreeding eider numbers decreased on exposed islands particularly near eagle nests, while they increased near eagle nests in the sheltered archipelago. We observed population-scale predator-induced shifts in the breeding distribution, likely reflecting both excess mortality on exposed islands and a shift of the population core to low-risk habitats.\r\n\r\nWe show that a returning predator can affect the distribution and density of its prey in a habitat-specific manner, which is important to consider in parallel with effects of human-induced ecosystem changes during conservation planning.\r\n\r\nData from the publication:\r\n\r\nLiving with the enemy: The return of an apex predator is associated with habitat shifts in a common but rapidly declining prey population. Landscape Ecology (2025) https://doi.org/10.1007/s10980-025-02152-7\r\n\r\nDescription of the data\r\n\r\nThis data contains numbers of breeding common eiders (Somateria mollissima) on 3648 islands in 1997-2020 along with parameters for the islands. The parameters were standardised to zero mean and unit variance in the analyses, and are presented here in the scaled form. Due to the sensitivity of the spatial data, the scaled latitudinal and longitudinal parameters are rounded to one decimal. \r\n\r\nEider_pairs: Number of eider pairs breeding on the island in the particular year\r\n\r\nlnSize: Island size in hectares; lnSize is its natural logarithm\r\n\r\nYear: Year (standardised)\r\n\r\nLon: longitude (Euref89), standardised and rounded to one decimal\r\n\r\nLat: latitude (Euref89), standardised and rounded to one decimal\r\n\r\nLand: The percentage of land area within a radius of 5 km from the centroid of the island (standardised). Used to describe the archipelago zone. Smaller values (low land percentage) represents outer archipelago, and high values inner archipelago.\r\n\r\nWTE: \r\n\r\nCategorical variable with three levels describing occupancy of white-tailed eagle (Haliaeetus albicilla, WTE) territories in the vicinity of the island in the previous year.\r\n\r\n\r\n\r\nClosest occupied WTE nest/territory within a radius of 2 km from the centre of the island\r\n\r\nWithin 2–10 km radius from the island\r\n\r\nNo occupied territories within 10 km.\r\n\r\n\r\nForcov: Median forest cover of the island (%) (standardised)\r\n\r\nIsland_ID: Unique identifier for each island\r\n\r\nYear_f: Year as categorical value\r\n\r\npos2: A distance matrix for the islands based on the coordinates in a geographical grid of 2x2 km squares, used in the spatial exponential covariance structure in the r-package glmmTMB to account for spatial autocorrelation.\r\n\r\nFunding for this study was obtained from Victoriastiftelsen, the Swedish Cultural Foundation in Finland, and from Sophie von Julins stiftelse and the Finnish Ministry of Agriculture and Forestry via the Nature and Game Management Trust Finland."
},
"field_of_science": [
{
"id": "ea57f07d-16d8-4c7a-8a52-39ef1112278a",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1181",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Ecology, evolutionary biology",
"fi": "Ekologia, evoluutiobiologia",
"sv": "Ekologi, evolutionsbiologi"
}
}
],
"infrastructure": [],
"issued": "2025-06-23",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.15723441",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Living with the enemy: The return of an apex predator is associated with habitat shifts in a common but rapidly declining prey population"
},
"created": "2025-11-13T07:37:29Z",
"modified": "2025-11-13T07:37:29Z",
"dataset_versions": [
{
"id": "0c3bacf8-a53c-4f24-b513-3061e848c01c",
"title": {
"en": "Living with the enemy: The return of an apex predator is associated with habitat shifts in a common but rapidly declining prey population"
},
"persistent_identifier": "doi:10.5281/zenodo.15723441",
"state": "published",
"created": "2025-11-13T07:37:29Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "6c5bc6b9-b80c-456e-83a9-9178ab6244b1",
"access_rights": {
"id": "bf717283-b810-433d-894f-45654b56b27c",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "cb67818d-927e-4e07-aa0b-00c5c091425c",
"roles": [
"creator"
],
"person": {
"id": "8eb8ac83-fafc-4480-ad50-f488b4574df6",
"name": "Gautier Follain"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "62b19699-c2b6-48be-b369-4d5970205517",
"roles": [
"creator"
],
"person": {
"id": "307c3644-29ec-4f59-b9de-e2534d3ef793",
"name": "Sujan Ghimire",
"external_identifier": "https://orcid.org/0000-0003-3660-4300"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "ecf56cfe-b9b4-4dad-a3b5-4d647c68259e",
"roles": [
"creator"
],
"person": {
"id": "d3be22f1-d9a3-40b0-9790-2ec353db4848",
"name": "Joanna Pylvänäinen",
"external_identifier": "https://orcid.org/0000-0002-3540-5150"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c4fe286f-96a5-4e55-b0f7-51a7f8ed141b",
"roles": [
"creator"
],
"person": {
"id": "8d6f333c-efbc-416e-8f4e-ee1e5743fae4",
"name": "Johanna Ivaska"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "6fa81974-6f43-4fc9-9236-224a2ca03a08",
"roles": [
"creator"
],
"person": {
"id": "fc43cab3-94ba-45ed-8c51-51281575b609",
"name": "Guillaume Jacquemet",
"external_identifier": "https://orcid.org/0000-0002-9286-920X"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "d5b47103-2aee-4dd0-9d41-2f2f4fc2b5fe",
"roles": [
"publisher"
],
"organization": {
"id": "7c36a8bf-947b-450b-adde-5de530ecafd3",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "This repository contains a StarDist deep learning model designed for segmenting MiaPaCa2 cells from the CD44 channel in fluorescence microscopy images. The model is capable of accurately segmenting individual MiaPaCa2 cells while excluding HUVECs. Trained on a small dataset, the model achieved an Intersection over Union (IoU) score of 0.884 and an F1 Score of 0.950, indicating high precision in cell segmentation.\r\n\r\nSpecifications\r\n\r\n\r\n\r\n\r\n\r\nModel: StarDist for segmenting MiaPaCa2 cells from the CD44 fluorescence channel\r\n\r\n\r\n\r\n\r\nTraining Dataset:\r\n\r\n\r\n\r\n\r\n\r\n\r\nNumber of Images: 8 paired fluorescence microscopy images and label masks\r\n\r\n\r\n\r\n\r\nMicroscope: Spinning disk confocal microscope (3i CSU-W1) with a 20x objective, NA 0.8\r\n\r\n\r\n\r\n\r\nData Type: Fluorescence microscopy images of the CD44 channel, obtained after immunofluorescence staining with primary and secondary antibodies and manually segmented masks\r\n\r\n\r\n\r\n\r\nFile Format: TIFF (.tif)\r\n\r\n\r\n\r\n\r\n\r\n\r\nFluorescence Images: 16-bit\r\n\r\n\r\n\r\n\r\nMasks: 8-bit\r\n\r\n\r\n\r\n\r\n\r\nImage Size: 920 x 920 pixels (Pixel size: 0.6337 x 0.6337 µm²)\r\n\r\n\r\n\r\n\r\n\r\nModel Capabilities:\r\n\r\n\r\n\r\n\r\n\r\n\r\nSegment MiaPaCa2 Cells: Accurately detects individual MiaPaCa2 cells while ignoring HUVECs\r\n\r\n\r\n\r\n\r\nMeasure CD44 Intensity: Allows for the measurement of CD44 intensity around MiaPaCa2 cells, specifically from the CD44 channel\r\n\r\n\r\n\r\n\r\n\r\nPerformance:\r\n\r\n\r\n\r\n\r\n\r\n\r\nAverage IoU: 0.884\r\n\r\n\r\n\r\n\r\nAverage F1 Score: 0.950\r\n\r\n\r\n\r\n\r\n\r\nModel Training: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)\r\n\r\n\r\n\r\n\r\n\r\nReference\r\n\r\nFast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers\r\n\r\n\r\nGautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet\r\n\r\nbioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654"
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-29",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.13442876",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Stardist_MiaPaCa2_from_CD44"
},
"created": "2025-11-13T07:37:26Z",
"modified": "2025-11-13T07:37:26Z",
"dataset_versions": [
{
"id": "6c5bc6b9-b80c-456e-83a9-9178ab6244b1",
"title": {
"en": "Stardist_MiaPaCa2_from_CD44"
},
"persistent_identifier": "doi:10.5281/zenodo.13442876",
"state": "published",
"created": "2025-11-13T07:37:26Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "50f2ad44-9886-4886-a250-d60628782eb4",
"access_rights": {
"id": "33688a85-dbe7-4376-8e66-b858e4737cb9",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "52d9b9a1-626c-48d8-8dd5-8c5d1cc0f8a9",
"roles": [
"creator"
],
"person": {
"id": "3ad28921-0d4c-4040-a8c2-95d837c46b6d",
"name": "Jussi Jylkkä"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "b6e08bbe-2126-43ab-9d5f-ae0f006bfe27",
"roles": [
"creator"
],
"person": {
"id": "f5cabbf1-bcbd-4ccc-83e6-1ec3c30fc707",
"name": "Aleksi Hupli"
},
"organization": {
"id": "6ef74ed8-41f9-4a16-bac2-535c3ad904d7",
"pref_label": {
"en": "Tampere University",
"fi": "Tampereen Yliopisto",
"sv": "Tampere University"
},
"external_identifier": "https://ror.org/033003e23"
}
},
{
"id": "fd70578a-f860-4a6c-bbac-9a1d6db5d065",
"roles": [
"creator"
],
"person": {
"id": "829baf35-34d5-40f1-bb29-cdc84344e398",
"name": "Aleksandra Nikolaeva"
},
"organization": {
"id": "a5e5048d-5f9b-4811-bcf5-fc5dc0df1880",
"pref_label": {
"en": "University of Turku",
"fi": "Turun yliopisto",
"sv": "Åbo universitet"
},
"external_identifier": "https://ror.org/05vghhr25"
}
},
{
"id": "5ae281f0-236c-457d-bd7e-db48dd2e170a",
"roles": [
"creator"
],
"person": {
"id": "9f9efb90-268e-4bd5-8e70-5acae70f0b31",
"name": "Sandra Alanen"
},
"organization": {
"id": "195950a2-8e4b-4f4b-b218-732da36bf0b9",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi University",
"sv": "Åbo Akademi University"
},
"external_identifier": "https://ror.org/029pk6x14"
}
},
{
"id": "53d454d7-4bfb-4099-a08b-ef555e433781",
"roles": [
"creator"
],
"person": {
"id": "1bbc8cbd-f980-4b9e-afb7-19022a2ca0f5",
"name": "Anna Erika Back"
},
"organization": {
"id": "195950a2-8e4b-4f4b-b218-732da36bf0b9",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi University",
"sv": "Åbo Akademi University"
},
"external_identifier": "https://ror.org/029pk6x14"
}
},
{
"id": "941c28bd-fad8-47ca-b6a8-eb4c581c98e0",
"roles": [
"creator"
],
"person": {
"id": "54f02856-45b5-402a-a663-5bde080af0e2",
"name": "Sara Lindqvist"
},
"organization": {
"id": "195950a2-8e4b-4f4b-b218-732da36bf0b9",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi University",
"sv": "Åbo Akademi University"
},
"external_identifier": "https://ror.org/029pk6x14"
}
},
{
"id": "f6ab60b3-c3e1-4ec9-83fa-2700baaf6203",
"roles": [
"creator"
],
"person": {
"id": "47041d6f-2208-4370-9c59-f17ac53a6bf8",
"name": "Andreas Krabbe",
"external_identifier": "https://orcid.org/0000-0001-8650-5074"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "967252e5-967f-4e7b-864a-107224019113",
"roles": [
"creator"
],
"person": {
"id": "e554b64f-ac09-4cf2-8760-b3ddc0b3b133",
"name": "Maya Lavie-Ajayi"
},
"organization": {
"id": "66df7621-beba-411a-a100-c19c819c79d9",
"pref_label": {
"en": "Ben-Gurion University of the Negev",
"fi": "Ben-Gurion University of the Negev",
"sv": "Ben-Gurion University of the Negev"
},
"external_identifier": "https://ror.org/05tkyf982"
}
},
{
"id": "bc52b64c-6a43-4960-adc9-e61ad7247d5a",
"roles": [
"creator"
],
"person": {
"id": "c13992aa-02c4-45c6-b656-3b76a4762ea2",
"name": "Oskari Kantonen"
},
"organization": {
"id": "a5e5048d-5f9b-4811-bcf5-fc5dc0df1880",
"pref_label": {
"en": "University of Turku",
"fi": "Turun yliopisto",
"sv": "Åbo universitet"
},
"external_identifier": "https://ror.org/05vghhr25"
}
},
{
"id": "998a8f70-d838-4dd7-9f29-e6c9f88a2b38",
"roles": [
"publisher"
],
"organization": {
"id": "ae42222e-9219-4308-baf5-35de5abaf528",
"pref_label": {
"en": "figshare",
"fi": "figshare",
"sv": "figshare"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Additional file 1."
},
"field_of_science": [
{
"id": "40ef0581-be61-4b67-9e27-8b37df90b0d1",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta515",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Psychology",
"fi": "Psykologia",
"sv": "Psykologi"
}
}
],
"infrastructure": [],
"issued": "2024-08-14",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.6084/m9.figshare.26637669",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Additional file 1 of The holistic effects of medical cannabis compared to opioids on pain experience in Finnish patients with chronic pain"
},
"created": "2025-11-13T07:37:22Z",
"modified": "2025-11-13T07:37:22Z",
"dataset_versions": [
{
"id": "50f2ad44-9886-4886-a250-d60628782eb4",
"title": {
"en": "Additional file 1 of The holistic effects of medical cannabis compared to opioids on pain experience in Finnish patients with chronic pain"
},
"persistent_identifier": "doi:10.6084/m9.figshare.26637669",
"state": "published",
"created": "2025-11-13T07:37:22Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "b047601c-bad9-40fd-b4dd-00c8e0e74289",
"access_rights": {
"id": "374f4dd1-63d8-459c-a81c-adfb7ec2e968",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "73d309e1-00ec-49c5-a9c3-bd689b1a4a9f",
"roles": [
"creator"
],
"person": {
"id": "d8f18609-15de-4c00-985b-65026c179821",
"name": "Janine Grolleman"
},
"organization": {
"id": "ebfdec94-d3f1-4ff8-9e61-b1efd576e12e",
"pref_label": {
"en": "Eindhoven University of Technology",
"fi": "Eindhoven University of Technology",
"sv": "Eindhoven University of Technology"
},
"external_identifier": "https://ror.org/02c2kyt77"
}
},
{
"id": "f2cdd200-4203-49fe-a229-6120dc3afa6f",
"roles": [
"creator"
],
"person": {
"id": "fc040d53-076d-40b2-8e0f-9eaae12e8a93",
"name": "Carlijn V. C. Bouten"
},
"organization": {
"id": "ebfdec94-d3f1-4ff8-9e61-b1efd576e12e",
"pref_label": {
"en": "Eindhoven University of Technology",
"fi": "Eindhoven University of Technology",
"sv": "Eindhoven University of Technology"
},
"external_identifier": "https://ror.org/02c2kyt77"
}
},
{
"id": "a3c4766b-35ae-4d51-81a4-1c45179e4a33",
"roles": [
"creator"
],
"person": {
"id": "5ac005a2-0185-4925-81ce-a2d354a926c7",
"name": "Vito Conte"
},
"organization": {
"id": "ebfdec94-d3f1-4ff8-9e61-b1efd576e12e",
"pref_label": {
"en": "Eindhoven University of Technology",
"fi": "Eindhoven University of Technology",
"sv": "Eindhoven University of Technology"
},
"external_identifier": "https://ror.org/02c2kyt77"
}
},
{
"id": "b2d54b68-5238-4b72-9676-30724851d538",
"roles": [
"creator"
],
"person": {
"id": "85c4b621-9c36-4568-bead-2830b8469b7b",
"name": "Cecilia M. Sahlgren",
"external_identifier": "https://orcid.org/0000-0003-3350-4937"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "047709d4-2caa-4694-8553-12aa9633a285",
"roles": [
"publisher"
],
"organization": {
"id": "fc8e5fd1-9a92-4bb1-b6b1-fb58ae6ac0f5",
"pref_label": {
"en": "figshare",
"fi": "figshare",
"sv": "figshare"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Additional file 3: Video S3. Confined endothelial cell collective where juxtacrine Notch signalling is active. Timestamp and scalebar are displayed. Video S4. Confined endothelial cell collective where juxtacrine Notch signalling is inhibited. Timestamp and scalebar are displayed."
},
"field_of_science": [
{
"id": "e9745cdf-d0e1-4797-8fee-3324e5b2bee2",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta1182",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Biochemistry, cell and molecular biology",
"fi": "Biokemia, solu- ja molekyylibiologia",
"sv": "Biokemi, cell- och molekylärbiologi"
}
}
],
"infrastructure": [],
"issued": "2025-10-02",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.6084/m9.figshare.30261939",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Additional file 3 of An integrated 2D framework for quantifying cellular mechanics reveals the impact of juxtacrine Notch signalling on directed collective migration of endothelial cells"
},
"created": "2025-11-13T07:37:19Z",
"modified": "2025-11-13T07:37:19Z",
"dataset_versions": [
{
"id": "b047601c-bad9-40fd-b4dd-00c8e0e74289",
"title": {
"en": "Additional file 3 of An integrated 2D framework for quantifying cellular mechanics reveals the impact of juxtacrine Notch signalling on directed collective migration of endothelial cells"
},
"persistent_identifier": "doi:10.6084/m9.figshare.30261939",
"state": "published",
"created": "2025-11-13T07:37:19Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "26098e15-bae2-4bae-8fa9-549dc24ba6cb",
"access_rights": {
"id": "09606859-44a9-4e38-b483-e767e1497ef4",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "d01ac02c-fc70-4c68-9434-8383cb693ff0",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/open",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Open",
"fi": "Avoin"
}
},
"restriction_grounds": []
},
"actors": [
{
"id": "89127541-b6b5-42a7-ae2c-8cfeba3dfc6f",
"roles": [
"creator"
],
"person": {
"id": "d3c56948-9a30-4004-8e8d-b1bbf4ad0652",
"name": "Ilia Gugenishvili",
"external_identifier": "https://orcid.org/0000-0002-7657-9149"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c2ded875-4955-4fcc-8e83-a5b978f287ff",
"roles": [
"creator"
],
"person": {
"id": "2d4ae0a7-012e-48eb-b978-7db1d2e7f0ef",
"name": "Anna-Greta Nyström",
"external_identifier": "https://orcid.org/0000-0001-6871-0752"
},
"organization": {
"id": "a4dc30ef-4be2-412a-a399-ebac8a37213e",
"pref_label": {
"en": "Åbo Akademi University",
"fi": "Åbo Akademi",
"sv": "Åbo Akademi",
"und": "Åbo Akademi"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01903",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "00bd53bf-becd-43fb-8b5c-5ddd65922271",
"roles": [
"publisher"
],
"organization": {
"id": "130ec49a-20f2-4091-bb3c-34cbf43bc619",
"pref_label": {
"en": "Zenodo",
"fi": "Zenodo",
"sv": "Zenodo"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-abo",
"description": {
"en": "Dataset for \"Virtual Reality and Charitable Giving: The Influence of Space, Presence, and Attention\"."
},
"field_of_science": [
{
"id": "cd108517-a078-45a3-a774-6f05c6fd4e96",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta511",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Economics",
"fi": "Kansantaloustiede",
"sv": "Nationalekonomi"
}
},
{
"id": "6dc03e79-42a5-4dfa-94e0-80469342b5d1",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta512",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Business and management",
"fi": "Liiketaloustiede",
"sv": "Företagsekonomi"
}
}
],
"infrastructure": [],
"issued": "2024-05-27",
"keyword": [],
"language": [],
"metadata_owner": {
"id": "dde6b62a-99e9-49c2-92bc-4a08ae3d9a09",
"organization": "service_abo"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.5281/zenodo.11366580",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Virtual Reality and Charitable Giving: The Influence of Space, Presence, and Attention"
},
"created": "2025-11-13T07:37:17Z",
"modified": "2025-11-13T07:37:17Z",
"dataset_versions": [
{
"id": "26098e15-bae2-4bae-8fa9-549dc24ba6cb",
"title": {
"en": "Virtual Reality and Charitable Giving: The Influence of Space, Presence, and Attention"
},
"persistent_identifier": "doi:10.5281/zenodo.11366580",
"state": "published",
"created": "2025-11-13T07:37:17Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "07c6bb94-5b18-4d1c-9cac-61bc72232154",
"access_rights": {
"id": "1045693c-399d-44d6-9888-463ec9558e34",
"license": [
{
"id": "35b18e72-3819-4ec6-a1be-14624f29d968",
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Creative Commons Attribution 4.0 International (CC BY 4.0)",
"fi": "Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"
}
}
],
"access_type": {
"id": "729ffd9f-6d7a-40e9-aa97-a363a16fd113",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/restricted",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Restricted use",
"fi": "Saatavuutta rajoitettu"
}
},
"restriction_grounds": [
{
"id": "0ed3a2e1-6c11-4278-af67-c6713f838ecd",
"url": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds/code/other",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds",
"pref_label": {
"en": "Restricted access due to other reasons",
"fi": "Saatavuutta rajoitettu muulla perusteella",
"sv": "Begränsad åtkomst av övriga skäl"
}
}
],
"show_file_metadata": false
},
"actors": [
{
"id": "d42bde86-3338-4a0b-a398-9957d8eca74a",
"roles": [
"creator",
"publisher"
],
"person": {
"id": "99cea3e4-de52-43b9-9b8b-4f36652e2020",
"name": "Joni Eronen",
"email": "<hidden>"
},
"organization": {
"id": "20b4ef97-a6f2-433a-be3c-15440804c478",
"pref_label": {
"en": "NMR-spektroskopia",
"fi": "NMR-spektroskopia",
"sv": "NMR-spektroskopia",
"und": "NMR-spektroskopia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402220",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-ida",
"description": {
"en": "# Overview\nSignal amplification by reversible exchange (SABRE) is a parahydrogen-based hyperpolarisation technique that significantly enhances nuclear magnetic resonance signals without expensive hardware. While conventional SABRE relies on a static polarisation transfer field set near the level anticrossing (LAC) condition, recent work has shown that oscillating fields can substantially boost the hyperpolarisation levels. Here, we develop a new theoretical model that generalises the LAC condition to account for the oscillating polarisation transfer fields, thereby explaining the spin dynamics of SABRE under such conditions. We demonstrate that the oscillating fields can be used to optimise coherent polarisation transfer while simultaneously suppressing scalar relaxation of the second kind. Large-scale spin dynamics simulations and experiments show enhanced 19F hyperpolarisation compared to conventional SABRE, with a 79% improvement observed experimentally. This work demonstrates a generalisable strategy for improving the efficiency of SABRE, advancing its potential for various applications, such as in biomedicine.\n\n# Data\nThis dataset includes the following compressed archives:\n- Code.zip\n- Experiments.zip\n- Results.zip\n\n## Code.zip\nThis archive contains a clone of the GitHub repository of the project. It includes:\n- Jupyter notebooks to support the theoretical discussion\n- Jupyter notebooks for simple SABRE simulations\n- Python scripts for advanced SABRE simulations\n- Python scripts for experimental data processing\n\n## Experiments.zip\nThis archive contains the experimental files output by the spectrometer and the raw output of the data processing scripts. The experiment folders have been categorised using a consistent naming scheme :\n- Nucleus: 1H or 19F\n- Experiment type: FieldDep, BuildUp, Relaxation, Thermal Equilibrium\n- Applied magnetic field\n\n## Results.zip\nThis archive contains Excel sheets where both the experimental and simulated data have been organised and processed further. The data has been organised into three files:\n- Experimental results\n- 3 spin simulations\n- 8 spin simulations"
},
"field_of_science": [
{
"id": "7e12a692-26de-4e3c-b28c-64f8a32ef40a",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta114",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Physical sciences",
"fi": "Fysiikka",
"sv": "Fysik"
}
},
{
"id": "4fca0be9-45d1-4544-9eeb-24dec6bcb0df",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta116",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Chemical sciences",
"fi": "Kemia",
"sv": "Kemi"
}
}
],
"fileset": {
"storage_service": "ida",
"csc_project": "2003494",
"total_files_count": 3,
"total_files_size": 432336256
},
"infrastructure": [],
"issued": "2025-11-12",
"keyword": [
"SABRE",
"LAC",
"spin",
"dynamics",
"simulation",
"SpinSolve",
"experiment",
"hyperpolarisation"
],
"language": [
{
"id": "ec748146-3403-4a7f-adfe-bdbb1b889372",
"url": "http://lexvo.org/id/iso639-3/eng",
"in_scheme": "http://lexvo.org/id/",
"pref_label": {
"en": "English",
"fi": "englanti",
"sv": "engelska"
}
}
],
"metadata_owner": {
"id": "9a903fda-46ea-4384-aa16-6889af5148cb",
"organization": "oulu.fi",
"admin_organization": "oulu.fi"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.23729/fd-049a080e-23f5-37af-b04d-60f16959bd97",
"pid_generated_by_fairdata": true,
"projects": [
{
"id": "f0303d26-3cc9-418b-8b40-84faefe8751a",
"title": {
"en": "Optical dimension of NMR spectroscopy"
},
"participating_organizations": [
{
"id": "20b4ef97-a6f2-433a-be3c-15440804c478",
"pref_label": {
"en": "NMR-spektroskopia",
"fi": "NMR-spektroskopia",
"sv": "NMR-spektroskopia",
"und": "NMR-spektroskopia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402220",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
],
"funding": [
{
"funder": {
"organization": {
"id": "8f22ed54-7903-4fe1-9602-9370b89e15d1",
"pref_label": {
"en": "Research Council of Finland",
"fi": "Suomen Akatemia",
"sv": "Finlands Akademi",
"und": "Suomen Akatemia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/02458939",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
},
"funder_type": {
"id": "d38a8484-f3d7-43cf-ad79-829ebb3ba9eb",
"url": "http://uri.suomi.fi/codelist/fairdata/funder_type/code/academy-of-finland",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/funder_type",
"pref_label": {
"en": "Academy of Finland",
"fi": "Suomen Akatemia"
}
}
},
"funding_identifier": "351357"
}
]
},
{
"id": "03d5a1ca-8a44-4155-a203-5c4d3487be09",
"title": {
"en": "Spin hyperpolarisation processes by multiscale simulations"
},
"participating_organizations": [
{
"id": "cd0e53f1-8f0a-4972-b8b0-fde81326afb9",
"pref_label": {
"en": "CSC – IT Center for Science",
"fi": "CSC - Tieteen tietotekniikan keskus Oy",
"sv": "CSC – IT Center for Science",
"und": "CSC - Tieteen tietotekniikan keskus Oy"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/09206320",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
},
{
"id": "20b4ef97-a6f2-433a-be3c-15440804c478",
"pref_label": {
"en": "NMR-spektroskopia",
"fi": "NMR-spektroskopia",
"sv": "NMR-spektroskopia",
"und": "NMR-spektroskopia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402220",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
],
"funding": [
{
"funder": {
"organization": {
"id": "8f22ed54-7903-4fe1-9602-9370b89e15d1",
"pref_label": {
"en": "Research Council of Finland",
"fi": "Suomen Akatemia",
"sv": "Finlands Akademi",
"und": "Suomen Akatemia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/02458939",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
},
"funder_type": {
"id": "d38a8484-f3d7-43cf-ad79-829ebb3ba9eb",
"url": "http://uri.suomi.fi/codelist/fairdata/funder_type/code/academy-of-finland",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/funder_type",
"pref_label": {
"en": "Academy of Finland",
"fi": "Suomen Akatemia"
}
}
},
"funding_identifier": "361326"
}
]
},
{
"id": "fb6075db-88fc-4908-9a86-926c1212f37b",
"title": {
"en": "Enhancing NMR sensitivity through metal-free catalysis"
},
"participating_organizations": [
{
"id": "20b4ef97-a6f2-433a-be3c-15440804c478",
"pref_label": {
"en": "NMR-spektroskopia",
"fi": "NMR-spektroskopia",
"sv": "NMR-spektroskopia",
"und": "NMR-spektroskopia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904-2402220",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "5540c65d-0d55-47f8-a1e5-d32ca7ff281e",
"pref_label": {
"en": "University of Oulu",
"fi": "Oulun yliopisto",
"sv": "Uleåborgs universitet",
"und": "Oulun yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01904",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
],
"funding": [
{
"funder": {
"organization": {
"id": "8f22ed54-7903-4fe1-9602-9370b89e15d1",
"pref_label": {
"en": "Research Council of Finland",
"fi": "Suomen Akatemia",
"sv": "Finlands Akademi",
"und": "Suomen Akatemia"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/02458939",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
},
"funder_type": {
"id": "d38a8484-f3d7-43cf-ad79-829ebb3ba9eb",
"url": "http://uri.suomi.fi/codelist/fairdata/funder_type/code/academy-of-finland",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/funder_type",
"pref_label": {
"en": "Academy of Finland",
"fi": "Suomen Akatemia"
}
}
},
"funding_identifier": "362959"
}
]
}
],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [],
"theme": [],
"title": {
"en": "Dataset: Generalised level anticrossings explain improved 19F SABRE hyperpolarisation under oscillating magnetic fields"
},
"created": "2025-11-12T08:48:59Z",
"modified": "2025-11-12T09:05:44Z",
"dataset_versions": [
{
"id": "07c6bb94-5b18-4d1c-9cac-61bc72232154",
"title": {
"en": "Dataset: Generalised level anticrossings explain improved 19F SABRE hyperpolarisation under oscillating magnetic fields"
},
"persistent_identifier": "doi:10.23729/fd-049a080e-23f5-37af-b04d-60f16959bd97",
"state": "published",
"created": "2025-11-12T08:48:59Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
},
{
"id": "2e33058b-1b03-4c64-84ac-4db8b11a8c28",
"access_rights": {
"id": "ae309326-1536-41e3-87a2-095924585bca",
"license": [
{
"id": "03258502-6709-437e-9a06-5661857ea4bf",
"custom_url": "https://rightsstatements.org/page/InC/1.0/",
"title": {
"en": "Other (Not Open)",
"fi": "Muu (Ei avoin)",
"und": "Muu (Ei avoin)"
},
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/other-closed",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Other (Not Open)",
"fi": "Muu (Ei avoin)"
}
}
],
"access_type": {
"id": "729ffd9f-6d7a-40e9-aa97-a363a16fd113",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/restricted",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Restricted use",
"fi": "Saatavuutta rajoitettu"
}
},
"restriction_grounds": [
{
"id": "0ed3a2e1-6c11-4278-af67-c6713f838ecd",
"url": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds/code/other",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds",
"pref_label": {
"en": "Restricted access due to other reasons",
"fi": "Saatavuutta rajoitettu muulla perusteella",
"sv": "Begränsad åtkomst av övriga skäl"
}
}
]
},
"actors": [
{
"id": "82017666-30eb-4905-86c1-ae75fa205ab0",
"roles": [
"creator"
],
"person": {
"id": "e0ac9d4b-8254-431e-b2b3-8374ec0e4539",
"name": "Sillanpää, Elina",
"external_identifier": "0000-0001-6375-959X"
},
"organization": {
"id": "1505af75-8a92-445f-890d-5cb4d731ed13",
"pref_label": {
"en": "Liikuntatieteellinen tiedekunta",
"fi": "Liikuntatieteellinen tiedekunta",
"sv": "Liikuntatieteellinen tiedekunta",
"und": "Liikuntatieteellinen tiedekunta"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906-215000",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "eadcca51-75f7-4622-8cf9-1bdd1203d3bb",
"roles": [
"creator",
"rights_holder"
],
"person": {
"id": "83ef2923-c482-4a81-b567-3d27f0ccb2ca",
"name": "Maaranen, Heidi"
},
"organization": {
"id": "1505af75-8a92-445f-890d-5cb4d731ed13",
"pref_label": {
"en": "Liikuntatieteellinen tiedekunta",
"fi": "Liikuntatieteellinen tiedekunta",
"sv": "Liikuntatieteellinen tiedekunta",
"und": "Liikuntatieteellinen tiedekunta"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906-215000",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "7da68871-edc5-49d0-8bf6-c1ec7447a460",
"roles": [
"creator"
],
"person": {
"id": "d589336f-6f03-4790-a6f5-1e7520604384",
"name": "Föhr, Tiina"
},
"organization": {
"id": "1505af75-8a92-445f-890d-5cb4d731ed13",
"pref_label": {
"en": "Liikuntatieteellinen tiedekunta",
"fi": "Liikuntatieteellinen tiedekunta",
"sv": "Liikuntatieteellinen tiedekunta",
"und": "Liikuntatieteellinen tiedekunta"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906-215000",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
},
{
"id": "989e2674-13b0-47dc-b665-99a3883d6221",
"roles": [
"publisher",
"rights_holder"
],
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
],
"bibliographic_citation": "Sillanpää, Elina; Maaranen, Heidi; Föhr, Tiina. <i>Physical and health education teachers' fat attitudes, weight stigma and pedagogical practices</i>. University of Jyväskylä.",
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-jyu",
"description": {
"en": "The dataset originates from a survey study examining Finnish physical and health education teachers’ perceptions of obesity, body weight, and weight-related stigma. The purpose of the study was to investigate teachers’ attitudes toward fatness, their attributions regarding the causes of obesity, and the factors associated with these beliefs. Data were collected through an online questionnaire administered between September and October 2025.\r\n\r\nThe survey included standardized and validated scales, such as the Fat Attitudes Assessment Toolkit (FAAT), the Modified Weight Bias Internalization Scale (WBIS-M), and a social desirability measure (SDC), along with demographic and background questions (e.g., teaching experience, region, and weight-related experiences).\r\n\r\nThe final dataset comprises responses from 81 teachers working in comprehensive and upper secondary schools across Finland. The data are quantitative, cross-sectional, and anonymized, suitable for use in statistical analyses exploring professional attitudes toward obesity and weight stigma in educational contexts."
},
"field_of_science": [
{
"id": "6a5c35e3-d81b-4259-a8b3-8bad11beb0de",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta315",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Sport and fitness sciences",
"fi": "Liikuntatiede",
"sv": "Gymnastik- och idrottsvetenskap"
}
}
],
"infrastructure": [],
"issued": "2025-11-12",
"keyword": [
"Fat attitudes",
"teachers",
"health education",
"physical education",
"obesity",
"weight stigma",
"Lihavuusasenteet",
"opettajat",
"terveyskasvatus",
"lihavuus",
"lihavuusstigma"
],
"language": [],
"metadata_owner": {
"id": "6703da25-7710-4517-b2d5-696b20fdf8ab",
"organization": "jyu.fi",
"admin_organization": "jyu.fi"
},
"other_identifiers": [],
"persistent_identifier": "doi:10.17011/jyx/dataset/106760",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [],
"relation": [],
"remote_resources": [],
"spatial": [],
"state": "published",
"temporal": [
{
"start_date": "2025-09-01",
"end_date": "2025-10-31"
}
],
"theme": [
{
"id": "43645c7a-ffe3-44d9-bf94-64be932769c5",
"url": "http://www.yso.fi/onto/koko/p2469",
"in_scheme": "http://www.yso.fi/onto/koko/",
"pref_label": {
"en": "social stigmatisation",
"fi": "leimautuminen (sosiologia)",
"sv": "stigmatisering (sociologi)"
}
},
{
"id": "fc15d31f-ecbc-49ed-adc6-cdd75b9756e2",
"url": "http://www.yso.fi/onto/koko/p2991",
"in_scheme": "http://www.yso.fi/onto/koko/",
"pref_label": {
"en": "physical education (school subject)",
"fi": "koululiikunta",
"sv": "skolidrott"
}
},
{
"id": "27755ffe-ca7d-41c6-8cf0-69b37c9dd876",
"url": "http://www.yso.fi/onto/koko/p33013",
"in_scheme": "http://www.yso.fi/onto/koko/",
"pref_label": {
"en": "health education",
"fi": "terveyskasvatus",
"sv": "hälsofostran"
}
},
{
"id": "f69ea983-98b4-49d7-8330-7f661ac09e68",
"url": "http://www.yso.fi/onto/koko/p36905",
"in_scheme": "http://www.yso.fi/onto/koko/",
"pref_label": {
"en": "obesity",
"fi": "lihavuus",
"sv": "fetma"
}
},
{
"id": "50410696-afca-4cac-af09-80cc54c4191e",
"url": "http://www.yso.fi/onto/koko/p37161",
"in_scheme": "http://www.yso.fi/onto/koko/",
"pref_label": {
"en": "attitudes",
"fi": "asenteet",
"sv": "attityder"
}
}
],
"title": {
"en": "Physical and health education teachers' fat attitudes, weight stigma and pedagogical practices",
"fi": "Liikunnan- ja terveystiedon opettajien lihavuuskäsitykset, lihavuusstigma ja opetuskäytänteet"
},
"created": "2025-11-12T06:47:16Z",
"modified": "2025-11-12T06:47:17Z",
"dataset_versions": [
{
"id": "2e33058b-1b03-4c64-84ac-4db8b11a8c28",
"title": {
"en": "Physical and health education teachers' fat attitudes, weight stigma and pedagogical practices",
"fi": "Liikunnan- ja terveystiedon opettajien lihavuuskäsitykset, lihavuusstigma ja opetuskäytänteet"
},
"persistent_identifier": "doi:10.17011/jyx/dataset/106760",
"state": "published",
"created": "2025-11-12T06:47:16Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 1,
"metadata_repository": "Fairdata"
},
{
"id": "b0f14ce2-cd7a-44ab-af7f-b52e40414263",
"access_rights": {
"id": "d1d45a7c-4079-44c1-94e9-57dbdf628414",
"license": [
{
"id": "03258502-6709-437e-9a06-5661857ea4bf",
"description": {
"en": "The dataset is (D) available only by permission from the data depositor/creator.",
"fi": "Aineisto on käytettävissä (D) vain luovuttajan luvalla."
},
"url": "http://uri.suomi.fi/codelist/fairdata/license/code/other-closed",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/license",
"pref_label": {
"en": "Other (Not Open)",
"fi": "Muu (Ei avoin)"
}
}
],
"access_type": {
"id": "729ffd9f-6d7a-40e9-aa97-a363a16fd113",
"url": "http://uri.suomi.fi/codelist/fairdata/access_type/code/restricted",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/access_type",
"pref_label": {
"en": "Restricted use",
"fi": "Saatavuutta rajoitettu"
}
},
"restriction_grounds": [
{
"id": "0ed3a2e1-6c11-4278-af67-c6713f838ecd",
"url": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds/code/other",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/restriction_grounds",
"pref_label": {
"en": "Restricted access due to other reasons",
"fi": "Saatavuutta rajoitettu muulla perusteella",
"sv": "Begränsad åtkomst av övriga skäl"
}
}
]
},
"actors": [
{
"id": "98b1209f-2e05-4cd1-82d2-57b5ab4672d6",
"roles": [
"creator"
],
"person": {
"id": "a5bfe773-e40d-4d5f-a041-17a1463bb32a",
"name": "Auranen, Tiina",
"external_identifier": "https://orcid.org/0000-0001-6044-5958"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "e521a3c8-e868-43c9-93c8-8b7adef467e1",
"roles": [
"creator"
],
"person": {
"id": "82ecdf46-d7ed-4740-8ca6-b6df8897e2c9",
"name": "Karhulahti, Veli-Matti",
"external_identifier": "https://orcid.org/0000-0003-3709-5341"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "8b531c00-01fb-4158-a53e-ae97dd15c586",
"roles": [
"creator"
],
"person": {
"id": "1c77c6fb-1df5-4b23-a9b8-5881a6d3d045",
"name": "Saariniemi, Sara"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "ea50f557-9fb8-41ea-b17d-065d42b19071",
"roles": [
"creator"
],
"person": {
"id": "e8ccbd26-20b5-40f5-835f-1eb11b0bff1e",
"name": "Turtiainen, Emilia",
"external_identifier": "https://orcid.org/0000-0002-0845-6403"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "c3124b20-2b1a-40ca-a7b2-6edd33e24aa1",
"roles": [
"creator"
],
"person": {
"id": "02fd26f0-51ee-4ab2-b514-dea437ff02e3",
"name": "Valtonen, Venla"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "0c6dd824-1d62-4abf-888b-44ad98451887",
"roles": [
"creator"
],
"person": {
"id": "efcd2069-fa38-49ec-b431-fb1813abf907",
"name": "Kauraoja, Valtteri"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "8fbcbc36-ecf4-4030-92fb-d93e5fb2d3ce",
"roles": [
"creator"
],
"person": {
"id": "e1e84771-3959-4cdb-b167-4adb7d0daa24",
"name": "Nerg, Henri"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "2670522c-3aca-4678-8308-61ed851a80fa",
"roles": [
"creator"
],
"person": {
"id": "fe959357-3e02-45ec-8ce1-90b56eedb682",
"name": "Siidoroff, Aleksi"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "85e77071-08fd-489b-9ed5-b9bade0ce281",
"roles": [
"creator"
],
"person": {
"id": "dc46075d-db4d-4185-8a96-3ece5d082cc7",
"name": "Malinen, Ville",
"external_identifier": "https://orcid.org/0000-0002-1854-735X"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "01c05a82-74e1-43d9-8141-862eaaa5cdf4",
"roles": [
"creator"
],
"person": {
"id": "628aeff0-7e5b-4c92-b934-cad316ecf90c",
"name": "Munukka, Pauliina"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "90ede53d-8865-4641-b026-baa63bd2bf47",
"roles": [
"creator"
],
"person": {
"id": "5687b24c-ef68-4c50-9eb6-c067d5519da5",
"name": "Siutila, Miia",
"external_identifier": "https://orcid.org/0000-0003-0287-808X"
},
"organization": {
"id": "d2e33900-ae70-494e-9eea-d9c9c5667d92",
"pref_label": {
"en": "University of Jyväskylä",
"fi": "Jyväskylän yliopisto",
"sv": "Jyväskylä universitet",
"und": "Jyväskylän yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/01906",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
},
{
"id": "79f8a56d-d2dd-45fe-8446-4061ded6dcb5",
"roles": [
"publisher"
],
"organization": {
"id": "24e34cd1-11fc-4777-985c-dbdd68b78c24",
"pref_label": {
"en": "Tietoarkisto",
"fi": "Tietoarkisto",
"sv": "Tietoarkisto",
"und": "Tietoarkisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10122-6130",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization",
"parent": {
"id": "ea83ea7b-4d44-4d0b-b4ac-a8df3f00ae20",
"pref_label": {
"en": "Tampere University",
"fi": "Tampereen yliopisto",
"sv": "Tammerfors universitet",
"und": "Tampereen yliopisto"
},
"url": "http://uri.suomi.fi/codelist/fairdata/organization/code/10122",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/organization"
}
}
}
],
"cumulative_state": 0,
"data_catalog": "urn:nbn:fi:att:data-catalog-harvest-fsd",
"description": {
"en": "The data includes initial interviews from a three-year longitudinal study. The interviewees are 7th-9th graders who actively play digital games. The aim of the initial interviews was to form an overall picture of the youth's life situation in the beginning of the data collection. The interviews cover the youth's gaming habits, family and school life, and social relationships. In addition, their experiences of school bullying, leisure activities, and future study goals were discussed. Background information includes the age and gender of the interviewee. The dataset contains both Finnish interview transcripts and English translations of them.",
"fi": "Aineisto sisältää kolme vuotta kestävän pitkittäistutkimuksen aloitushaastattelut. Haastateltavat ovat 7-9-luokkalaisia, jotka harrastavat aktiivisesti digitaalisia pelejä. Alkuhaastattelujen tavoitteena oli muodostaa yleiskuva nuorten elämäntilanteesta aineistonkeruun alussa. Haastatteluissa käsitellään nuorten pelaamistottumuksia, perhe- ja kouluelämää sekä sosiaalisia suhteita. Lisäksi selvitetään heidän kokemuksiaan mm. koulukiusaamisesta, vapaa-ajan viettotapoja ja tulevaisuuden opintotavoitteita. Taustatietona on mainittu mm. haastateltavan ikä ja sukupuoli. Aineisto sisältää sekä suomenkieliset haastattelulitteraatiot, että niiden englanninkieliset käännökset."
},
"field_of_science": [
{
"id": "eb6d49d6-6bfc-4d8c-86b8-d9497924b295",
"url": "http://www.yso.fi/onto/okm-tieteenala/ta5",
"in_scheme": "http://www.yso.fi/onto/okm-tieteenala/conceptscheme",
"pref_label": {
"en": "Social sciences",
"fi": "YHTEISKUNTATIETEET",
"sv": "Samhällsvetenskaper"
}
}
],
"infrastructure": [],
"issued": "2025-11-11",
"keyword": [
"tietokonepelit",
"pelaaminen",
"verkkopelit",
"vapaa-aika",
"riippuvuus",
"harrastukset",
"ajankäyttö",
"pelit",
"sosiaaliset suhteet",
"nuoret",
"perheet",
"kaverit",
"yläkoululaiset",
"digital games",
"social interaction",
"leisure time activities",
"hobbies",
"families",
"friends",
"youth culture",
"youth",
"Ajankäyttö",
"Vapaa-aika, matkailu ja urheilu",
"Time use",
"Leisure, tourism and sport"
],
"language": [
{
"id": "c757dc29-552d-48b2-9efc-4d53b939a7ef",
"url": "http://lexvo.org/id/iso639-3/fin",
"in_scheme": "http://lexvo.org/id/",
"pref_label": {
"en": "Finnish",
"fi": "suomi",
"sv": "finska"
}
},
{
"id": "ec748146-3403-4a7f-adfe-bdbb1b889372",
"url": "http://lexvo.org/id/iso639-3/eng",
"in_scheme": "http://lexvo.org/id/",
"pref_label": {
"en": "English",
"fi": "englanti",
"sv": "engelska"
}
}
],
"metadata_owner": {
"id": "0eabdf3f-948e-43bf-84ab-fe7b6163faaf",
"organization": "service_fsd"
},
"other_identifiers": [
{
"notation": "https://doi.org/10.60686/t-fsd4014",
"identifier_type": {
"id": "753e313e-2eb1-4f81-988c-d50e7a7cd7fb",
"url": "http://uri.suomi.fi/codelist/fairdata/identifier_type/code/doi",
"in_scheme": "http://uri.suomi.fi/codelist/fairdata/identifier_type",
"pref_label": {
"en": "Digital Object Identifier (DOI)"
}
},
"metax_ids": []
}
],
"persistent_identifier": "urn:nbn:fi:fsd:T-FSD4014",
"pid_generated_by_fairdata": false,
"projects": [],
"provenance": [
{
"id": "e1b9d05f-7c5c-43c8-9ab8-1633f37cd6ea",
"title": {
"en": "Collection"
},
"description": {
"en": "Contains the date(s) when the data were collected."
},
"spatial": {
"geographic_name": "Finland"
},
"temporal": {
"start_date": "2022-09-01",
"end_date": "2024-09-01"
},
"is_associated_with": [],
"used_entity": [],
"variables": [
{
"id": "a10c68d0-18c4-4e42-b062-ffd3a59b3147",
"pref_label": {
"en": "Youth in grades 7-9 at partner schools who actively engage in digital gaming.",
"fi": "Yhteistyökoulujen 7-9-luokalla olevat aktiivisesti digitaalisia pelejä harrastavat nuoret."
}
}
]
},
{
"id": "3a3a1ed0-0c09-4a2d-8093-fe2607ae0b64",
"title": {
"en": "Production"
},
"description": {
"en": "Date when the data collection were produced (not distributed or archived)"
},
"temporal": {
"start_date": "2025-11-11",
"end_date": "2025-11-11"
},
"is_associated_with": [],
"used_entity": [],
"variables": []
},
{
"id": "abf15fb1-1618-4ccd-8418-483166f09b10",
"title": {
"en": "Collection"
},
"description": {
"en": "Contains the date(s) when the data were collected."
},
"spatial": {
"geographic_name": "Suomi",
"reference": {
"id": "684b98e8-d5c1-4a59-9247-4793cbbd38e4",
"url": "http://www.yso.fi/onto/yso/p94426",
"in_scheme": "http://www.yso.fi/onto/yso/places",
"pref_label": {
"en": "Finland",
"fi": "Suomi",
"sv": "Finland"
},
"as_wkt": "POINT (27 65)"
}
},
"is_associated_with": [],
"used_entity": [],
"variables": []
}
],
"relation": [],
"remote_resources": [],
"spatial": [
{
"geographic_name": "Finland"
},
{
"geographic_name": "Suomi",
"reference": {
"id": "684b98e8-d5c1-4a59-9247-4793cbbd38e4",
"url": "http://www.yso.fi/onto/yso/p94426",
"in_scheme": "http://www.yso.fi/onto/yso/places",
"pref_label": {
"en": "Finland",
"fi": "Suomi",
"sv": "Finland"
},
"as_wkt": "POINT (27 65)"
}
}
],
"state": "published",
"temporal": [
{
"start_date": "2022-09-01",
"end_date": "2024-09-01"
}
],
"theme": [],
"title": {
"en": "Introduction Interviews of Actively Gaming Adolescents 2022-2024",
"fi": "Aktiivisesti pelaavien nuorten alkuhaastattelut 2022-2024"
},
"created": "2025-11-12T01:09:48Z",
"modified": "2025-11-12T01:09:48Z",
"dataset_versions": [
{
"id": "b0f14ce2-cd7a-44ab-af7f-b52e40414263",
"title": {
"en": "Introduction Interviews of Actively Gaming Adolescents 2022-2024",
"fi": "Aktiivisesti pelaavien nuorten alkuhaastattelut 2022-2024"
},
"persistent_identifier": "urn:nbn:fi:fsd:T-FSD4014",
"state": "published",
"created": "2025-11-12T01:09:48Z",
"version": 1
}
],
"published_revision": 1,
"version": 1,
"api_version": 3,
"metadata_repository": "Fairdata"
}
]
}