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We studied plasma ctDNA as a prognostic biomarker in 19 patients with metastatic melanoma and a detectable tumor mutation (13 BRAF, 5 NRAS, and 1 KRAS). Patients had received chemotherapy, interferon-alpha, and vemurafenib in a prospective clinical trial. Mutant allele frequency (MAF %) was determined with droplet digital PCR from pretreatment and sequential plasma samples. Higher pretreatment plasma ctDNA levels (MAF ≥3%) and detectable plasma ctDNA levels (MAF &gt;0%) at the time of radiologically confirmed best objective response were associated with poor prognosis even when accounting for other relevant prognostic factors including performance status, tumor mutation, metastasis stage, and lactate dehydrogenase levels in multivariable analysis. 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Kaminen-Ahola","external_identifier":"c21668c9-7319-4a36-aa45-6509b7f74d36"},"organization":{"id":"66aedd46-b413-47a6-a5d4-319ac4e083f5","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"0e720c90-db5b-4cda-8c03-fe90ca64924a","roles":["publisher"],"organization":{"id":"57664777-2958-4e3e-ae80-f53e390d05a1","pref_label":{"en":"figshare"}}}],"cumulative_state":0,"data_catalog":"urn:nbn:fi:att:data-catalog-tuni","description":{"en":"Abstract Background Prenatal alcohol exposure (PAE) affects embryonic development, causing a variable fetal alcohol spectrum disorder (FASD) phenotype with neuronal disorders and birth defects. We hypothesize that early alcohol-induced epigenetic changes disrupt the accurate developmental programming of embryo and consequently cause the complex phenotype of developmental disorders. To explore the etiology of FASD, we collected unique biological samples of 80 severely alcohol-exposed and 100 control newborns at birth. Methods We performed genome-wide DNA methylation (DNAm) and gene expression analyses of placentas by using microarrays (EPIC, Illumina) and mRNA sequencing, respectively. To test the manifestation of observed PAE-associated DNAm changes in embryonic tissues as well as potential biomarkers for PAE, we examined if the changes can be detected also in white blood cells or buccal epithelial cells of the same newborns by EpiTYPER. To explore the early effects of alcohol on extraembryonic placental tissue, we selected 27 newborns whose mothers had consumed alcohol up to gestational week 7 at maximum to the separate analyses. Furthermore, to explore the effects of early alcohol exposure on embryonic cells, human embryonic stem cells (hESCs) as well as hESCs during differentiation into endodermal, mesodermal, and ectodermal cells were exposed to alcohol in vitro. Results DPPA4, FOXP2, and TACR3 with significantly decreased DNAm were discovered—particularly the regulatory region of DPPA4 in the early alcohol-exposed placentas. When hESCs were exposed to alcohol in vitro, significantly altered regulation of DPPA2, a closely linked heterodimer of DPPA4, was observed. While the regulatory region of DPPA4 was unmethylated in both control and alcohol-exposed hESCs, alcohol-induced decreased DNAm similar to placenta was seen in in vitro differentiated mesodermal and ectodermal cells. Furthermore, common genes with alcohol-associated DNAm changes in placenta and hESCs were linked exclusively to the neurodevelopmental pathways in the enrichment analysis, which emphasizes the value of placental tissue when analyzing the effects of prenatal environment on human development. Conclusions Our study shows the effects of early alcohol exposure on human embryonic and extraembryonic cells, introduces candidate genes for alcohol-induced developmental disorders, and reveals potential biomarkers for prenatal alcohol exposure."},"field_of_science":[{"id":"a006e4cc-b051-4d1c-b94c-e1655d8888bc","url":"http://www.yso.fi/onto/okm-tieteenala/ta3111","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Biomedicine","fi":"Biolääketieteet","sv":"Biomedicinska 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Supplementary video."},"field_of_science":[{"id":"1946ea74-e9b2-4b6f-9b9e-093d809467e3","url":"http://www.yso.fi/onto/okm-tieteenala/ta3122","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Cancers","fi":"Syöpätaudit","sv":"Cancersjukdomar"}},{"id":"ce0419ba-487d-411c-91d5-b4b8a5a1d74b","url":"http://www.yso.fi/onto/okm-tieteenala/ta3125","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Otorhinolaryngology, ophthalmology","fi":"Korva-, nenä- ja kurkkutaudit, silmätaudit","sv":"Öron-, näs- och halssjukdomar, ögonsjukdomar"}}],"infrastructure":[],"issued":"2019-07-23","keyword":["Cancers","Otorhinolaryngology 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A zebrafish larvae xenograft model has been applied in recent years to cancer research, particularly for drug testing purposes, showing promising results in drug testing against patient-derived tumour xenografts. Currently, these xenograft models apply imaging techniques to measure drug efficacy. However, this method carries several limitations, including timely imaging, thereby reducing the available number of tested fish and drugs. Here, we propose a PCR-based fast assay to evaluate drug efficacy in a zebrafish larvae xenograft model. Methods We tested two primary and corresponding metastatic head and neck squamous cell carcinoma (HNSCC) cell lines and patient-derived tongue cancer sample applying zebrafish larvae xenograft model. Cisplatin efficacy was tested using imaging technique and compared the results with PCR-based methods. Drug screening of eight compounds was applied on both cell lines and patient sample using PCR. Results In a head-to-head comparison, all the three techniques (imaging, quantitative PCR, and droplet digital PCR) showed similar reduction of the cancer cells growth after cisplatin treatment. Using the quantitative PCR assay, we demonstrated a dose-dependent response of HNSCC cells to cisplatin. Drug screening results of four HNSCC cell lines and patient sample revealed different drug efficacy between tested cancer cells. Conclusion We introduce a novel, easy, fast and cost-effective PCR-based in vivo zebrafish larvae assay to test the response of cell lines and clinical tumour samples to anti-cancer drugs. This method goes hand-by-hand with the commonly used imaging assay."},"field_of_science":[{"id":"1946ea74-e9b2-4b6f-9b9e-093d809467e3","url":"http://www.yso.fi/onto/okm-tieteenala/ta3122","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Cancers","fi":"Syöpätaudit","sv":"Cancersjukdomar"}},{"id":"ce0419ba-487d-411c-91d5-b4b8a5a1d74b","url":"http://www.yso.fi/onto/okm-tieteenala/ta3125","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Otorhinolaryngology, ophthalmology","fi":"Korva-, nenä- ja kurkkutaudit, silmätaudit","sv":"Öron-, näs- och halssjukdomar, ögonsjukdomar"}}],"infrastructure":[],"issued":"2019-07-23","keyword":["Cancers","Otorhinolaryngology ophthalmology"],"language":[{"id":"ec748146-3403-4a7f-adfe-bdbb1b889372","url":"http://lexvo.org/id/iso639-3/eng","in_scheme":"http://lexvo.org/id/","pref_label":{"en":"English","fi":"englanti","sv":"engelska"}}],"metadata_owner":{"id":"eb8aa44e-e16b-4c6c-ae4d-b9be524b58ed","organization":"service_tuni"},"other_identifiers":[{"notation":"5b75ead2-c226-4529-881d-31bec55bb68b","metax_ids":[]}],"persistent_identifier":"doi:10.6084/m9.figshare.c.4585505.v1","pid_generated_by_fairdata":false,"projects":[],"provenance":[],"relation":[],"remote_resources":[],"spatial":[],"state":"published","temporal":[],"theme":[],"title":{"en":"PCR-based zebrafish model for personalised medicine in head and neck cancer"},"created":"2025-01-28T16:36:48Z","modified":"2026-07-13T01:01:54Z","dataset_versions":[{"id":"beee60d8-00bb-4342-8c14-eb9bc43228f9","title":{"en":"PCR-based zebrafish model for personalised medicine in head and neck 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Data on the risk of stroke recurrence and the risk of other adverse pregnancy outcomes are essential for adequate counselling and surveillance in subsequent pregnancies. The aim of this systematic review is to describe the implications of a pregnancy-associated stroke for the future health of these women. Methods We searched Ovid Medline, PubMed, Cochrane Library and CINAHL for articles published in 1980–2018. Articles including women with pregnancy-associated stroke and information on at least one of the following outcomes were included: 1) recurrence of stroke during subsequent pregnancy, 2) number and course of subsequent pregnancies and their outcomes and 3) subsequent cardiovascular health. Results Twelve articles were included in the review, with six providing information on subsequent pregnancies, four on subsequent maternal health and two on both. The included articles varied greatly in terms of study design, length of follow up and reported outcomes. We found 252 women with pregnancy-associated stroke for whom the outcomes of interest were reported: 135 women with information on subsequent pregnancies and 123 women with information on future health. In total, 55 pregnancies after stroke were found. In the majority of studies, the incidence of pregnancy complications was comparable to that of the general population. The risk of stroke recurrence during pregnancy was 2%. Data on subsequent health of these women were limited, and the quality of the data varied between the studies. Conclusions Data on subsequent pregnancies and health of women with a history of pregnancy-associated stroke are limited. Further research on this topic is essential for adequate counselling and secondary prevention."},"field_of_science":[{"id":"214cc22e-77a6-450a-a58c-175bf6e036ea","url":"http://www.yso.fi/onto/okm-tieteenala/ta3123","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Gynaecology and paediatrics","fi":"Naisten- ja lastentaudit","sv":"Kvinno- och barnsjukdomar"}}],"infrastructure":[],"issued":"2019-05-28","keyword":["Gynaecology and 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organisaatio"}}},{"id":"400427a7-67ea-4836-94e2-fa03aa10f8f6","roles":["creator"],"person":{"id":"1123d9c2-dc43-4476-96ad-7e0620762496","name":"Vesa P. Hytönen","external_identifier":"4618d571-749e-41b5-aac6-eba10c6c46dc"},"organization":{"id":"ea83ea7b-4d44-4d0b-b4ac-a8df3f00ae20","pref_label":{"en":"Tampere University","fi":"Tampereen yliopisto","sv":"Tammerfors universitet","und":"Tampereen yliopisto"},"url":"http://uri.suomi.fi/codelist/fairdata/organization/code/10122","in_scheme":"http://uri.suomi.fi/codelist/fairdata/organization"}},{"id":"5a29df8d-f3c9-4c01-9d5c-e90b746cffad","roles":["publisher"],"organization":{"id":"63ebfe0a-9968-493c-b87e-976cd511e59e","pref_label":{"en":"figshare"}}}],"cumulative_state":0,"data_catalog":"urn:nbn:fi:att:data-catalog-tuni","description":{"en":"Abstract Background Avidins are biotin-binding proteins commonly found in the vertebrate eggs. In addition to streptavidin from Streptomyces avidinii, a growing number of avidins have been characterized from divergent bacterial species. However, a systematic research concerning their taxonomy and ecological role has never been done. We performed a search for avidin encoding genes among bacteria using available databases and classified potential avidins according to taxonomy and the ecological niches utilized by host bacteria. Results Numerous avidin-encoding genes were found in the phyla Actinobacteria and Proteobacteria. The diversity of protein sequences was high and several new variants of genes encoding biotin-binding avidins were found. The living strategies of bacteria hosting avidin encoding genes fall mainly into two categories. Human and animal pathogens were overrepresented among the found bacteria carrying avidin genes. The other widespread category were bacteria that either fix nitrogen or live in root nodules/rhizospheres of plants hosting nitrogen-fixing bacteria. Conclusions Bacterial avidins are a taxonomically and ecologically diverse group mainly found in Actinobacteria, Proteobacteria and Bacteroidetes, associated often with plant invasiveness. Avidin encoding genes in plasmids hint that avidins may be horizontally transferred. The current survey may be used as a basis in attempts to understand the ecological significance of biotin-binding capacity."},"field_of_science":[{"id":"a006e4cc-b051-4d1c-b94c-e1655d8888bc","url":"http://www.yso.fi/onto/okm-tieteenala/ta3111","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Biomedicine","fi":"Biolääketieteet","sv":"Biomedicinska vetenskaper"}}],"infrastructure":[],"issued":"2021-04-10","keyword":["Biomedicine"],"language":[{"id":"ec748146-3403-4a7f-adfe-bdbb1b889372","url":"http://lexvo.org/id/iso639-3/eng","in_scheme":"http://lexvo.org/id/","pref_label":{"en":"English","fi":"englanti","sv":"engelska"}}],"metadata_owner":{"id":"eb8aa44e-e16b-4c6c-ae4d-b9be524b58ed","organization":"service_tuni"},"other_identifiers":[{"notation":"e5cf37d0-9cd7-4999-a695-7ca4ee4988cf","metax_ids":[]}],"persistent_identifier":"doi:10.6084/m9.figshare.c.5371198.v1","pid_generated_by_fairdata":false,"projects":[],"provenance":[],"relation":[],"remote_resources":[],"spatial":[],"state":"published","temporal":[],"theme":[],"title":{"en":"Bacterial avidins are a widely distributed protein family in Actinobacteria, Proteobacteria and Bacteroidetes"},"created":"2025-01-28T16:58:56Z","modified":"2026-07-13T01:01:27Z","dataset_versions":[{"id":"bb2eecdf-77a7-4b7b-9627-d01ae7c82974","title":{"en":"Bacterial avidins are a widely distributed protein family in Actinobacteria, Proteobacteria and Bacteroidetes"},"persistent_identifier":"doi:10.6084/m9.figshare.c.5371198.v1","state":"published","created":"2025-01-28T16:58:56Z","version":1}],"published_revision":5,"version":1,"api_version":3,"metadata_repository":"Fairdata","record_created":"2025-01-28T16:58:56Z","record_modified":"2026-07-13T01:01:28Z"},{"id":"137c8a5a-4f4b-4758-af62-2828b4e93b2f","access_rights":{"id":"711f15ae-98be-4e08-8650-8780da536944","license":[{"id":"35b18e72-3819-4ec6-a1be-14624f29d968","url":"http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0","in_scheme":"http://uri.suomi.fi/codelist/fairdata/license","pref_label":{"en":"Creative Commons Attribution 4.0 International (CC BY 4.0)","fi":"Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"}}],"access_type":{"id":"d01ac02c-fc70-4c68-9434-8383cb693ff0","url":"http://uri.suomi.fi/codelist/fairdata/access_type/code/open","in_scheme":"http://uri.suomi.fi/codelist/fairdata/access_type","pref_label":{"en":"Open","fi":"Avoin"}},"restriction_grounds":[]},"actors":[{"id":"7c648291-35d7-4c70-98bf-6d94d1482641","roles":["creator"],"person":{"id":"c0a28e15-1f78-471c-9f6f-8818dfa452e1","name":"Darina Czamara","external_identifier":"4633d38f-ebb7-486e-9c33-a206124540be"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"4344035e-d8a3-4cd2-9cdd-25c488b9640e","roles":["creator"],"person":{"id":"2e144101-d744-4d6a-90e6-387c803024b1","name":"Linda Dieckmann","external_identifier":"936ad923-0b9b-4da8-a978-d7bfc4e736d0"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"31d11bb1-f0a4-4fcc-829c-561939de9bd8","roles":["creator"],"person":{"id":"aaa54ef8-18eb-4667-a0d2-818d964bb9d6","name":"Simone Röh","external_identifier":"a4a4177f-6dca-43d2-bdce-739c997f8fed"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"d0b214bc-4929-4db0-9a3d-2806ad93b730","roles":["creator"],"person":{"id":"c62ec253-ca81-4151-995e-7c88ef1f3e30","name":"Sarah Kraemer","external_identifier":"cf719049-8039-4723-9a1a-5c035929bcf5"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"ee7399cf-e23b-4c2c-9569-48be77c99ce7","roles":["creator"],"person":{"id":"b14b5750-8060-439b-8e2c-b55e7a4164e4","name":"Rebecca C. 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Eriksson","external_identifier":"0286cda5-0730-48b1-aa1d-570fafafce62"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"4d5e8bf5-a53b-46d6-afcc-b6e8c557c9cd","roles":["creator"],"person":{"id":"9429a5b6-2351-494f-921e-d5dc27e7fea2","name":"Katri Räikkönen","external_identifier":"09482570-29e0-4134-8b36-92e4dfa1085f"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"f692c5ce-ccf2-48be-926e-5330e1d8734d","roles":["creator"],"person":{"id":"0b5605ae-598c-44b6-8c09-f2de2cb30146","name":"Wolfgang Henrich","external_identifier":"b6a30be7-52c1-40e4-830f-d7137996b81f"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"607eae36-db01-4846-9c87-4ef7ec89dc3f","roles":["creator"],"person":{"id":"6b8ae29f-f80f-4e8e-9dbf-2fcd59c40bf6","name":"Andreas Plagemann","external_identifier":"59b3d5d7-4c5b-4dbe-bb7e-898ebb35573b"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"5887c44c-1945-4e32-a3c4-87f03f5361a8","roles":["creator"],"person":{"id":"9810a82f-c91d-4f58-b05c-af389189a4d0","name":"Elisabeth B. Binder","external_identifier":"d1bc74bc-b113-4b8d-be84-82780e759272"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"3e609804-4f74-4828-87d9-6932b52188ff","roles":["creator"],"person":{"id":"02cd082b-3ac0-46f8-bbfa-d3664e9b623b","name":"Thorsten Braun","external_identifier":"1c5d0ede-afad-4953-8764-3740e709ccb5"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"1cb1226a-ad9d-4018-9601-7d9174eab010","roles":["creator"],"person":{"id":"538ce6ee-48e1-4962-99bd-906394a396fa","name":"Sonja Entringer","external_identifier":"6103ca39-cfe5-4d3d-baa1-beb3483c7807"},"organization":{"id":"c2c4c07e-fe2b-45bc-b69a-0e1bc22b52a1","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"522b33af-d574-408c-94c2-564f8f119824","roles":["publisher"],"organization":{"id":"c8c61376-a8c1-4c4f-9bae-856995503ce6","pref_label":{"en":"figshare"}}}],"cumulative_state":0,"data_catalog":"urn:nbn:fi:att:data-catalog-tuni","description":{"en":"Abstract Background Glucocorticoids (GCs) play a pivotal role in fetal programming. Antenatal treatment with synthetic GCs (sGCs) in individuals in danger of preterm labor is common practice. Adverse short- and long-term effects of antenatal sGCs have been reported, but their effects on placental epigenetic characteristics have never been systematically studied in humans. Results We tested the association between exposure to the sGC betamethasone (BET) and placental DNA methylation (DNAm) in 52 exposed cases and 84 gestational-age-matched controls. We fine-mapped associated loci using targeted bisulfite sequencing. The association of placental DNAm with gene expression and co-expression analysis on implicated genes was performed in an independent cohort including 494 placentas. Exposure to BET was significantly associated with lower placenta DNAm at an enhancer of FKBP5. FKBP5 (FK506-binding protein 51) is a co-chaperone that modulates glucocorticoid receptor activity. Lower DNAm at this enhancer site was associated with higher expression of FKBP5 and a co-expressed gene module. This module is enriched for genes associated with preeclampsia and involved in inflammation and immune response. Conclusions Our findings suggest that BET exposure during pregnancy associates with few but lasting changes in placental DNAm and may promote a gene expression profile associated with placental dysfunction and increased inflammation. This may represent a pathway mediating GC-associated negative long-term consequences and health outcomes in offspring."},"field_of_science":[{"id":"a006e4cc-b051-4d1c-b94c-e1655d8888bc","url":"http://www.yso.fi/onto/okm-tieteenala/ta3111","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Biomedicine","fi":"Biolääketieteet","sv":"Biomedicinska vetenskaper"}},{"id":"214cc22e-77a6-450a-a58c-175bf6e036ea","url":"http://www.yso.fi/onto/okm-tieteenala/ta3123","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Gynaecology and paediatrics","fi":"Naisten- ja lastentaudit","sv":"Kvinno- och barnsjukdomar"}}],"infrastructure":[],"issued":"2021-08-27","keyword":["Gynaecology and paediatrics","Biomedicine"],"language":[{"id":"ec748146-3403-4a7f-adfe-bdbb1b889372","url":"http://lexvo.org/id/iso639-3/eng","in_scheme":"http://lexvo.org/id/","pref_label":{"en":"English","fi":"englanti","sv":"engelska"}}],"metadata_owner":{"id":"eb8aa44e-e16b-4c6c-ae4d-b9be524b58ed","organization":"service_tuni"},"other_identifiers":[{"notation":"36131992-c5d8-4df1-82d6-609ede24b8d0","metax_ids":[]}],"persistent_identifier":"doi:10.6084/m9.figshare.c.5585868.v1","pid_generated_by_fairdata":false,"projects":[],"provenance":[],"relation":[],"remote_resources":[],"spatial":[],"state":"published","temporal":[],"theme":[],"title":{"en":"Betamethasone administration during pregnancy is associated with placental epigenetic changes with implications for inflammation"},"created":"2025-01-28T16:29:28Z","modified":"2026-07-13T01:01:09Z","dataset_versions":[{"id":"137c8a5a-4f4b-4758-af62-2828b4e93b2f","title":{"en":"Betamethasone administration during pregnancy is associated with placental epigenetic changes with implications for inflammation"},"persistent_identifier":"doi:10.6084/m9.figshare.c.5585868.v1","state":"published","created":"2025-01-28T16:29:28Z","version":1}],"published_revision":5,"version":1,"api_version":3,"metadata_repository":"Fairdata","record_created":"2025-01-28T16:29:28Z","record_modified":"2026-07-13T01:01:10Z"},{"id":"d476ca10-dd95-49a0-ab75-5147b35dc68a","access_rights":{"id":"bf297b64-0c18-4348-9241-f81072c63a5d","license":[{"id":"35b18e72-3819-4ec6-a1be-14624f29d968","url":"http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0","in_scheme":"http://uri.suomi.fi/codelist/fairdata/license","pref_label":{"en":"Creative Commons Attribution 4.0 International (CC BY 4.0)","fi":"Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"}}],"access_type":{"id":"d01ac02c-fc70-4c68-9434-8383cb693ff0","url":"http://uri.suomi.fi/codelist/fairdata/access_type/code/open","in_scheme":"http://uri.suomi.fi/codelist/fairdata/access_type","pref_label":{"en":"Open","fi":"Avoin"}},"restriction_grounds":[]},"actors":[{"id":"49612659-579e-45cf-80c2-9db9b8ad73ad","roles":["creator"],"person":{"id":"0397e106-ffc9-4e6c-bd67-1c668b88552f","name":"Daniel L. 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Deary","external_identifier":"c9462c4b-b5e5-46ec-a944-ea8efae4a631"},"organization":{"id":"7614133d-4737-4ea3-b0af-48b5abd4bac5","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"ae169bc9-480d-4633-ada1-9a6a1ef35ebc","roles":["creator"],"person":{"id":"eb080847-d89d-4136-b770-962c15264413","name":"Caroline L. Relton","external_identifier":"77a4c4dd-6b1f-420b-b821-eb973d0f6f83"},"organization":{"id":"7614133d-4737-4ea3-b0af-48b5abd4bac5","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"50d64497-3fb4-4668-a215-759c9b5e15a4","roles":["creator"],"person":{"id":"788d7680-e402-4b2d-9be7-19a1c48a5612","name":"Steve Horvath","external_identifier":"1f5b7d6b-263c-4da1-bff8-5e061c26fbb3"},"organization":{"id":"7614133d-4737-4ea3-b0af-48b5abd4bac5","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"a1a63eb9-cbbc-482c-b062-42df16d8193d","roles":["creator"],"person":{"id":"d75f08b5-ae34-4eea-8800-47987509876f","name":"Riccardo E. Marioni","external_identifier":"9537dfd4-327b-455b-844a-178f5bd63b4b"},"organization":{"id":"7614133d-4737-4ea3-b0af-48b5abd4bac5","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"0cb39ced-3db9-40f8-b6cc-183c6a9f32d9","roles":["publisher"],"organization":{"id":"9a218d2e-060c-4916-8563-76bfaea23bdf","pref_label":{"en":"figshare"}}}],"cumulative_state":0,"data_catalog":"urn:nbn:fi:att:data-catalog-tuni","description":{"en":"Abstract Background Biological aging estimators derived from DNA methylation data are heritable and correlate with morbidity and mortality. Consequently, identification of genetic and environmental contributors to the variation in these measures in populations has become a major goal in the field. Results Leveraging DNA methylation and SNP data from more than 40,000 individuals, we identify 137 genome-wide significant loci, of which 113 are novel, from genome-wide association study (GWAS) meta-analyses of four epigenetic clocks and epigenetic surrogate markers for granulocyte proportions and plasminogen activator inhibitor 1 levels, respectively. We find evidence for shared genetic loci associated with the Horvath clock and expression of transcripts encoding genes linked to lipid metabolism and immune function. Notably, these loci are independent of those reported to regulate DNA methylation levels at constituent clock CpGs. A polygenic score for GrimAge acceleration showed strong associations with adiposity-related traits, educational attainment, parental longevity, and C-reactive protein levels. Conclusion This study illuminates the genetic architecture underlying epigenetic aging and its shared genetic contributions with lifestyle factors and longevity."},"field_of_science":[{"id":"a006e4cc-b051-4d1c-b94c-e1655d8888bc","url":"http://www.yso.fi/onto/okm-tieteenala/ta3111","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Biomedicine","fi":"Biolääketieteet","sv":"Biomedicinska vetenskaper"}}],"infrastructure":[],"issued":"2021-06-30","keyword":["Biomedicine"],"language":[{"id":"ec748146-3403-4a7f-adfe-bdbb1b889372","url":"http://lexvo.org/id/iso639-3/eng","in_scheme":"http://lexvo.org/id/","pref_label":{"en":"English","fi":"englanti","sv":"engelska"}}],"metadata_owner":{"id":"eb8aa44e-e16b-4c6c-ae4d-b9be524b58ed","organization":"service_tuni"},"other_identifiers":[{"notation":"b7e818fa-f3ac-4e0f-9364-5d1e8157849c","metax_ids":[]}],"persistent_identifier":"doi:10.6084/m9.figshare.c.5490114.v1","pid_generated_by_fairdata":false,"projects":[],"provenance":[],"relation":[],"remote_resources":[],"spatial":[],"state":"published","temporal":[],"theme":[],"title":{"en":"Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging"},"created":"2025-01-28T16:52:21Z","modified":"2026-07-13T01:00:54Z","dataset_versions":[{"id":"d476ca10-dd95-49a0-ab75-5147b35dc68a","title":{"en":"Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging"},"persistent_identifier":"doi:10.6084/m9.figshare.c.5490114.v1","state":"published","created":"2025-01-28T16:52:21Z","version":1}],"published_revision":5,"version":1,"api_version":3,"metadata_repository":"Fairdata","record_created":"2025-01-28T16:52:21Z","record_modified":"2026-07-13T01:00:58Z"},{"id":"da7d5065-3b2c-4e29-a8de-4d38d7dc8455","access_rights":{"id":"e8681825-645c-485b-b4ed-1594cb44dcbe","license":[{"id":"35b18e72-3819-4ec6-a1be-14624f29d968","url":"http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0","in_scheme":"http://uri.suomi.fi/codelist/fairdata/license","pref_label":{"en":"Creative Commons Attribution 4.0 International (CC BY 4.0)","fi":"Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"}}],"access_type":{"id":"d01ac02c-fc70-4c68-9434-8383cb693ff0","url":"http://uri.suomi.fi/codelist/fairdata/access_type/code/open","in_scheme":"http://uri.suomi.fi/codelist/fairdata/access_type","pref_label":{"en":"Open","fi":"Avoin"}},"restriction_grounds":[]},"actors":[{"id":"b48bd5df-1a4b-41f1-ba59-32e0b97c5040","roles":["creator"],"person":{"id":"66f19802-9b9f-4c6a-a6e5-1c43c7ae88fb","name":"Linda Dieckmann","external_identifier":"936ad923-0b9b-4da8-a978-d7bfc4e736d0"},"organization":{"id":"9ee68e33-6a25-4b82-a8ec-be31b79a9a3c","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"2f7381e3-7019-45cd-8a43-31ee641ffceb","roles":["creator"],"person":{"id":"4f615974-d6d6-4e43-9ce6-cfcd5b234b25","name":"Marius Lahti-Pulkkinen","external_identifier":"60ce2929-ab1e-4ec4-abad-a2b65944eacb"},"organization":{"id":"9ee68e33-6a25-4b82-a8ec-be31b79a9a3c","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"b0503dc8-61ba-45d9-9719-1c5373dc9a47","roles":["creator"],"person":{"id":"1ed3c0b8-f2d0-4edb-b1cd-721635d24dd8","name":"Tuomas Kvist","external_identifier":"fa2ab8c6-d088-49f8-857b-9b95fc5389cd"},"organization":{"id":"9ee68e33-6a25-4b82-a8ec-be31b79a9a3c","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"db2b6ee8-cdf7-45c4-acd2-3b411967537a","roles":["creator"],"person":{"id":"f3461963-0425-48cc-85a0-79778a9ee8eb","name":"Jari Lahti","external_identifier":"aad81b76-1e3e-47ef-a9a6-04bd144c6d99"},"organization":{"id":"9ee68e33-6a25-4b82-a8ec-be31b79a9a3c","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"cf4bbbad-0f2e-46ed-9d77-8568554d3539","roles":["creator"],"person":{"id":"5b1933d0-bcc5-40fa-a3a9-0072930d122b","name":"Peter E. 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Binder","external_identifier":"d1bc74bc-b113-4b8d-be84-82780e759272"},"organization":{"id":"9ee68e33-6a25-4b82-a8ec-be31b79a9a3c","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"3b1a8cc3-c334-467c-aea3-dcdd641a7dba","roles":["creator"],"person":{"id":"67e4eed3-0490-47fb-82b2-409acc21101c","name":"Darina Czamara","external_identifier":"4633d38f-ebb7-486e-9c33-a206124540be"},"organization":{"id":"9ee68e33-6a25-4b82-a8ec-be31b79a9a3c","pref_label":{"en":"Unknown organization","fi":"Tuntematon organisaatio"}}},{"id":"d0456540-f40b-40e9-bbd5-780b1384039c","roles":["publisher"],"organization":{"id":"6a9fdb53-b54b-4bf4-af41-f1d6111fdc11","pref_label":{"en":"figshare"}}}],"cumulative_state":0,"data_catalog":"urn:nbn:fi:att:data-catalog-tuni","description":{"en":"Abstract Background Epigenetic clocks have been used to indicate differences in biological states between individuals of same chronological age. However, so far, only few studies have examined epigenetic aging in newborns—especially regarding different gestational or perinatal tissues. In this study, we investigated which birth- and pregnancy-related variables are most important in predicting gestational epigenetic age acceleration or deceleration (i.e., the deviation between gestational epigenetic age estimated from the DNA methylome and chronological gestational age) in chorionic villus, placenta and cord blood tissues from two independent study cohorts (ITU, n = 639 and PREDO, n = 966). We further characterized the correspondence of epigenetic age deviations between these tissues. Results Among the most predictive factors of epigenetic age deviations in single tissues were child sex, birth length, maternal smoking during pregnancy, maternal mental disorders until childbirth, delivery mode and parity. However, the specific factors related to epigenetic age deviation and the direction of association differed across tissues. In individuals with samples available from more than one tissue, relative epigenetic age deviations were not correlated across tissues. Conclusion Gestational epigenetic age acceleration or deceleration was not related to more favorable or unfavorable factors in one direction in the investigated tissues, and the relative epigenetic age differed between tissues of the same person. This indicates that epigenetic age deviations associate with distinct, tissue specific, factors during the gestational and perinatal period. Our findings suggest that the epigenetic age of the newborn should be seen as a characteristic of a specific tissue, and less as a general characteristic of the child itself."},"field_of_science":[{"id":"214cc22e-77a6-450a-a58c-175bf6e036ea","url":"http://www.yso.fi/onto/okm-tieteenala/ta3123","in_scheme":"http://www.yso.fi/onto/okm-tieteenala/conceptscheme","pref_label":{"en":"Gynaecology and paediatrics","fi":"Naisten- ja lastentaudit","sv":"Kvinno- och barnsjukdomar"}}],"infrastructure":[],"issued":"2021-04-30","keyword":["Gynaecology and paediatrics"],"language":[{"id":"ec748146-3403-4a7f-adfe-bdbb1b889372","url":"http://lexvo.org/id/iso639-3/eng","in_scheme":"http://lexvo.org/id/","pref_label":{"en":"English","fi":"englanti","sv":"engelska"}}],"metadata_owner":{"id":"eb8aa44e-e16b-4c6c-ae4d-b9be524b58ed","organization":"service_tuni"},"other_identifiers":[{"notation":"5f70b859-8657-47c6-a4e8-a6e29ff425df","metax_ids":[]}],"persistent_identifier":"doi:10.6084/m9.figshare.c.5408170.v1","pid_generated_by_fairdata":false,"projects":[],"provenance":[],"relation":[],"remote_resources":[],"spatial":[],"state":"published","temporal":[],"theme":[],"title":{"en":"Characteristics of epigenetic aging across gestational and perinatal tissues"},"created":"2025-01-28T16:37:42Z","modified":"2026-07-13T01:00:23Z","dataset_versions":[{"id":"da7d5065-3b2c-4e29-a8de-4d38d7dc8455","title":{"en":"Characteristics of epigenetic aging across gestational and perinatal tissues"},"persistent_identifier":"doi:10.6084/m9.figshare.c.5408170.v1","state":"published","created":"2025-01-28T16:37:42Z","version":1}],"published_revision":7,"version":1,"api_version":3,"metadata_repository":"Fairdata","record_created":"2025-01-28T16:37:43Z","record_modified":"2026-07-13T01:00:24Z"},{"id":"8128d8bb-8675-444a-82e4-f3b7b9605336","access_rights":{"id":"f175f4b2-7bba-4815-9c54-08b472251dbe","license":[{"id":"35b18e72-3819-4ec6-a1be-14624f29d968","url":"http://uri.suomi.fi/codelist/fairdata/license/code/CC-BY-4.0","in_scheme":"http://uri.suomi.fi/codelist/fairdata/license","pref_label":{"en":"Creative Commons Attribution 4.0 International (CC BY 4.0)","fi":"Creative Commons Nimeä 4.0 Kansainvälinen (CC BY 4.0)"}}],"access_type":{"id":"d01ac02c-fc70-4c68-9434-8383cb693ff0","url":"http://uri.suomi.fi/codelist/fairdata/access_type/code/open","in_scheme":"http://uri.suomi.fi/codelist/fairdata/access_type","pref_label":{"en":"Open","fi":"Avoin"}},"restriction_grounds":[],"show_file_metadata":true},"actors":[{"id":"a2153b0d-97df-44c1-9eb7-77284b757acd","roles":["creator","publisher"],"person":{"id":"3fec2988-8408-4eb2-b4fe-6f8be9a47cd4","name":"Sari Tuomikoski","email":"<hidden>"},"organization":{"id":"5540c65d-0d55-47f8-a1e5-d32ca7ff281e","pref_label":{"en":"University of Oulu","fi":"Oulun yliopisto","sv":"Uleåborgs universitet","und":"Oulun yliopisto"},"url":"http://uri.suomi.fi/codelist/fairdata/organization/code/01904","in_scheme":"http://uri.suomi.fi/codelist/fairdata/organization"}}],"cumulative_state":0,"data_catalog":"urn:nbn:fi:att:data-catalog-ida","description":{"en":"Data for article Korhonen et al. 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The respondents' opinions were surveyed on various statements, such as whether they thought they could raise awareness for cultural differences amongst their clients and could cope with the demands they were facing at work. Additionally, they were asked to evaluate how well they could support children's participation and initiatives in their work. The respondents' satisfaction with different aspects of their work, such as their occupational situation in general, their relationship with the clients, and their superior's support, was examined next. Finally, the respondents' views on several statements regarding cultural pluralism were charted. 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Vastaajilta kysyttiin, mitä kieliä ja kieliresursseja he käyttävät työssään.Vastaajat arvioivat, kuinka suurella osalla heidän asiakkaistaan on esimerkiksi maahanmuuttaja- tai pakolaistaustaa tai muita erityistarpeita. Seuraavaksi kysyttiin, kuinka hyvin tällaiset asiakkaat saavat tukea. Vastaajat ottivat kantaa siihen, kuinka hyvin he sosiaalityöntekijöinä voivat esimerkiksi vähentää asiakkaiden etnistä stereotypisointia tai lisätä tietoisuutta kulttuurisesta moninaisuudesta. Heitä pyydettiin myös arvioimaan, kuinka hyvin he pystyvät tukemaan lasten toimijuutta ja aloitteellisuutta. Sosiaalityöntekijät kertoivat, kuinka tyytyväisiä he ovat muun muassa omaan työtilanteeseensa tai suhteisiin asiakkaisiin, kollegoihin ja asiakkaan muuhun tukiverkkoon. Lopuksi kysyttiin vastaajien mielipiteitä erilaisiin väittämiin, jotka käsittelivät muun muassa kulttuurien sekoittumista. 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